Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02792 and BPUM_1628
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:26
# Commandline: needle
# -asequence dna-align/BSNT_02792___nrdI.1.24716.seq
# -bsequence dna-align/BPUM_1628___nrdI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02792___nrdI-BPUM_1628___nrdI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02792___nrdI-BPUM_1628___nrdI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02792___nrdI
# 2: BPUM_1628___nrdI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 417
# Identity: 298/417 (71.5%)
# Similarity: 298/417 (71.5%)
# Gaps: 42/417 (10.1%)
# Score: 1078.5
#
#
#=======================================
BSNT_02792___ 1 ------GTGGTACAAATCATATTTGATTCGAAAACAGGGAATGTTCAGCG 44
.||.|.||||||.||||||||||.||||||||.||||||||.||
BPUM_1628___n 1 ATGGAATTGATTCAAATCGTATTTGATTCAAAAACAGGAAATGTTCAACG 50
BSNT_02792___ 45 GTTTGTGAATAAAACAGGCTTTCAGCAGATACGCAAGGTGGACGAAATGG 94
.|||.||.|.||.|| ..||||.| ||||.|..||| ||||.|
BPUM_1628___n 51 CTTTTTGGACAAGAC-CCCTTTTA-CAGACAAACAA--------AAATTG 90
BSNT_02792___ 95 AC----CACG------TGGACACTCCGTTTGTTTTGGTCACCTACACGAC 134
|| .|.| ||||.||.||||||.||.|.|||||||..|||||
BPUM_1628___n 91 ACTGGAGAAGAGTTTTTGGATACGCCGTTTATTCTCGTCACCTTTACGAC 140
BSNT_02792___ 135 AAACTTCGGCCAGGTACCGGCAT----CAACACAATCATTTCTCGAAAAA 180
|...||.||.||.||.|| | |.||.|||||.|||.|.||.|||
BPUM_1628___n 141 AGGATTTGGACAAGTCCC----TAGTACCACTCAATCCTTTTTAGAGAAA 186
BSNT_02792___ 181 TACGCCCATCTCTTATTAGGAGTCGCTGCGAGCGGCAACAAAGTATGGGG 230
.|.||.||.||.|||.|.||.||.||.|.|||.||.||||||||.|||||
BPUM_1628___n 187 AATGCTCACCTTTTACTTGGTGTAGCAGTGAGTGGAAACAAAGTGTGGGG 236
BSNT_02792___ 231 CGATAACTTTGCAAAAAGCGCCGATACCATTTCAAGACAATATCAGGTGC 280
.|||||.|||||.||||||||||||||.|||||.|.|||||||||.||.|
BPUM_1628___n 237 AGATAATTTTGCCAAAAGCGCCGATACGATTTCTAAACAATATCAAGTTC 286
BSNT_02792___ 281 CGATCTTGCACAAATTTGAACTCAGCGGCACATCTAAA----GACGTTGA 326
|.||.|||||||..||||||||.|||||.|| ||| ||.|||||
BPUM_1628___n 287 CTATTTTGCACACCTTTGAACTAAGCGGAAC----AAAGAGGGATGTTGA 332
BSNT_02792___ 327 ATTGTTTACTCAGGAGGTAGAAAGAGTTGTCACAAAATCAAGTGCCAAAA 376
|||||||||.|||||||||||||||.||||||||||||||.||.|||||.
BPUM_1628___n 333 ATTGTTTACACAGGAGGTAGAAAGAATTGTCACAAAATCAGGTTCCAAAG 382
BSNT_02792___ 377 TGGATCCAGTTAAATAA 393
|||||.||.||||||||
BPUM_1628___n 383 TGGATACAATTAAATAA 399
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