Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01159 and BPUM_1652
See
Amino acid alignment /
Visit
BSNT_01159 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:48
# Commandline: needle
# -asequence dna-align/BSNT_01159.1.24716.seq
# -bsequence dna-align/BPUM_1652.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01159-BPUM_1652.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01159-BPUM_1652.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01159
# 2: BPUM_1652
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2269
# Identity: 1242/2269 (54.7%)
# Similarity: 1242/2269 (54.7%)
# Gaps: 602/2269 (26.5%)
# Score: 2879.0
#
#
#=======================================
BSNT_01159 1 ATGAAAGTATTTGAAGCGAAAACACTACTTTCAG----------AAGCGG 40
||||||.||||.||.||...|.|..||||.|||| |||
BPUM_1652 1 ATGAAAATATTAGATGCTCCATCTTTACTGTCAGCTATCGAACAAAG--- 47
BSNT_01159 41 CAGACCGTGCAAAAGAGTACAAAGAACTAAGA-ACGCAAATGGTCA--AC 87
|| ||||||..||..|.||.||..|| ||| ||||| || |.
BPUM_1652 48 ------GT-CAAAAGTCTATCAGGAGCTTCGAGACG-AAATG--CAGCAT 87
BSNT_01159 88 TTGAGAAAAGCGTTAAAAA--GCGTCGCTGATCTCAGTGACAGTGAATTC 135
.|||.||||||.||||||| |.|||| .||| |..|||| ||||||.
BPUM_1652 88 GTGAAAAAAGCATTAAAAAGTGTGTCG-GGAT-TAGGTGA---TGAATTT 132
BSNT_01159 136 TCAGGTAAAGGCGCTAG-CAATATCAAAGCCTTCTACCACGACCACGTCG 184
.|.||.|||||.|| || |||||||||.|||||.||..|.||.| |.|
BPUM_1652 133 ACTGGAAAAGGTGC-AGACAATATCAAGGCCTTTTATGAAGATC---TTG 178
BSNT_01159 185 -GCGT--CACCG--ACCAATGGATCGACTACATCGACATGAAAATCGCAT 229
||.| |||.| ||..|| .|.||||..||.||.|||.|||..||.|
BPUM_1652 179 CGCTTTACACAGATACTTAT--CTTGACTTTATTGATATGCAAAAAGCGT 226
BSNT_01159 230 TTTTCAACAGTATCGCCGG---------AGCCGCCGAAGACAAAGGCCTC 270
|||| || ||.| || ||| ..||.||..|| ||
BPUM_1652 227 TTTT----AG-ATGG--GGTAAAAGGAAAGC--TTGATGATGAA----TC 263
BSNT_01159 271 -TCAGACGCA--TACATCGAAGAATCCTTCCTG--GAGCACGAACTGGCA 315
|.||.||.| ||||| ||..|| |||||| .|...|
BPUM_1652 264 GTTAGGCGGAAGTACAT----------TTATTGATGAGCAC---TTTTTA 300
BSNT_01159 316 AATGC-CAAT--AAAAAA-----TCAAAATCCA------------TCATG 345
.|||| |||| |||.|| |||||| || |||.|
BPUM_1652 301 GATGCTCAATTGAAACAAGGCATTCAAAA--CAATAAGGATATGGTCAAG 348
BSNT_01159 346 TCCGAACAGAAAAAAGCGATGAAAGACATCCTGAACGA-TATCGACGACA 394
|||||.|||.||||..| |||| ||.| |.|.|||||||
BPUM_1652 349 ---GAACAAAAAGAAGCCCT-------ATCC---ACTATTTTTGACGACA 385
BSNT_01159 395 TC------CTCCCGCTCGACCTG------TTTTCAACAGAAACCTTCAAA 432
|| ||| .|.||.||| |||||| ||.|| |.|
BPUM_1652 386 TCAGTGATCTC---ATAGAACTGAATGTATTTTCA--AGTAA-----AGA 425
BSNT_01159 433 G----ACGAGC---TGGCCGATGCCAACGACAAACGCAAAAAAACACTGG 475
| |.|||| |.|..|||||.|||.|.|||.|.|||.|..||.|.|
BPUM_1652 426 GGTCAATGAGCATTTAGATGATGCGAACAAAAAAAGAAAAGATGCAATTG 475
BSNT_01159 476 ---------ATAAATTGGA-CGCCTTGGACGAAGACCTGAAAACAGAATA 515
|||||.|.|| | |.||.||.|||||||||||
BPUM_1652 476 AGGCTTTACATAAAATAGATC----------ATGAGCTAAAAACAGAATA 515
BSNT_01159 516 CGCCCTGTCAGAACCAAACGAACAATTCATCAAATC-CGACTT------C 558
|||....||||||.|.|.||||.|| ||..|| |.|||| |
BPUM_1652 516 CGCAAAATCAGAAGCGATCGAAAAA-----CACCTCGCAACTTTTTATGC 560
BSNT_01159 559 CAAAA-----GCTCCAAGAAGCAACTGGCAAAGGCAAAAACGCTACGCCC 603
.|||| ||| ||.||.||.|||||.|||||.||...|||.
BPUM_1652 561 AAAAATGATGGCT-------GCTACAGGAAAAGGGAAAAATGCCCAGCCG 603
BSNT_01159 604 ATCCACTACAACGCCAAGGCGTACCGTGACAGTGACA------TACATAA 647
||..|.|||.|.||.||.||.|..|.||| |||| ||| ||
BPUM_1652 604 ATGTATTACGATGCAAAAGCATTTCATGA----GACAGATGTGTAC--AA 647
BSNT_01159 648 GAA-------AAAAGGCGACATTGAAAAGCGGACTGAGGCTTA-CT---- 685
||| |||| .||| ||.|.||..|| |.||.|| ||
BPUM_1652 648 GAATCATGATAAAA-TCGA---TGCACAGGTGA---AAGCATATCTAAAA 690
BSNT_01159 686 -TGAAGATTAAGACAGAGGAAGCGAAGAAACGCGAGATTGAAA-AACTGA 733
||||.| |||| |||..||| ||||||| .|||.|.||| ||.|||
BPUM_1652 691 GTGAAAA--AAGA-AGAAAAAG---AGAAACG-AAGAATCAAAGAATTGA 733
BSNT_01159 734 AAGAAAGACTGAAAAACTACGATTATGCGGATG-----CCGATGA----- 773
||||||.||| |.|||||..|.|| || |.||.||
BPUM_1652 734 AAGAAAAACT------CAACGATCCTTCG--TGTATATCAGAAGAGAAAT 775
BSNT_01159 774 --------ATTTTACTCAATGGCAAAAACGATCGGCTATGAAAATC---- 811
|||.|| |.|.|| ||.||.|||||.||||
BPUM_1652 776 ACTTTGAGATTGTA------GACGAA----ATTGGATATGAGAATCTTTC 815
BSNT_01159 812 -TAACAGCAGAACA------ACAG--AGATACTTCACC----CAAATCGA 848
||..|.||.||.| |||| || ||||.|| |||||||.
BPUM_1652 816 TTACGATCAAAAAATGTATTACAGCCAG---CTTCTCCAGATCAAATCGC 862
BSNT_01159 849 AAACACGCGTGAACTTGAAGCAGGCTTCAAAGGGGTT------------- 885
|| ||| |||||| |||.|||||||
BPUM_1652 863 AA--------GAA---GAAGCA----TCAGAGGGGTTCGTTGATGTTGTA 897
BSNT_01159 886 ---------GCCGTCGGCCTTTATGATTCCGGGAAAGACGCGGTCGTAGG 926
||.||.||..|.||||||...|..|||||..|.||.||.||
BPUM_1652 898 AAAGGTGCAGCAGTTGGTTTATATGATGTAGCCAAAGATACAGTAGTTGG 947
BSNT_01159 927 CCTGTGGGATATGGTCACAGATCCGGGCGGAACCGTTGAA---GCCATTA 973
|.|.|..|||.|.||.||||||||.||.||..|||||||| |.|.|.|
BPUM_1652 948 CATCTATGATCTTGTGACAGATCCTGGAGGTGCCGTTGAATCGGTCGTAA 997
BSNT_01159 974 CAGGAGCGATGGCT------CACCCGATCAAAACGTATGAAGCCATTTCA 1017
| |||| ||.||.||..||||.|...||||.|||
BPUM_1652 998 C---------GGCTGTTTCCCATCCAATTGAAACATCGAAAGCGATT--- 1035
BSNT_01159 1018 GCGGCAA-TCGA----AGAATCATACCAAAAAGACATGGTGA---ATGGC 1059
||.|| |||| |||.||||.||||||||| |||.| ||||.
BPUM_1652 1036 --GGAAAGTCGATTTCAGACTCATTCCAAAAAGA---GGTCATCGATGGT 1080
BSNT_01159 1060 GACACCTACTCAAGAGCAAGATGGGTGTCATATGCGGTTGGCACTGTTGT 1109
||..|.||.||..||.||...|||.|..|.||||||..|||..||.|.|
BPUM_1652 1081 GATGCATATTCTCGATCACACTGGTTTGCCTATGCGACTGGTTCTCTAG- 1129
BSNT_01159 1110 CACATCAATTGTC---GGCACAAAAGGTGTAGGAGCCGTCTCTAAAACAG 1156
||..|||.||| |||.|.|||||.|.|||.|||.|..|.|||||.|
BPUM_1652 1130 --CAGAAATCGTCTTTGGCTCTAAAGGGGCAGGTGCCATTACAAAAACGG 1177
BSNT_01159 1157 GCACAGCTGCCAAAGTGACGGCCAAAGTCAAAACAGCAGCAAACAAATCA 1206
|.|| ||||||.||||| |
BPUM_1652 1178 GGAC---------------------------AACAGCGGCAAA------A 1194
BSNT_01159 1207 GCAACAGCCCAAAAAGCCATAATGGTCTCAAAACAAACCGTTGATCACAT 1256
.||||.|...|.||||.|.| || ||||| .|||
BPUM_1652 1195 ACAACGGTGAAGAAAGGCCT--TG-------AACAA-----GGAT----- 1225
BSNT_01159 1257 CAAACAAAA--AGTAAACACAGGC---ATT--GAAGTATCAA-----AAA 1294
||||| |.||.|||.||.| ||| || |||.| |.|
BPUM_1652 1226 ----CAAAATCATTAGACAGAGTCTCTATTCCGA---ATCTATTGCCATA 1268
BSNT_01159 1295 AACACGTCAAAACCAGGTTAAATCAAATCGGAGATCTCACTCTAGCTGAT 1344
..||| ||||| || |||| |||||||.|
BPUM_1652 1269 CTCAC--CAAAA-----TT---TCAA---------------CTAGCTGGT 1293
BSNT_01159 1345 ATTCTCCCGTATCATCCGCGTCACGACTTAG-TGCCGGCGGGCGTTCCTT 1393
..|| ||| || ||||| |
BPUM_1652 1294 GGTC-------------------CGA---AGCTGCCG------------T 1309
BSNT_01159 1394 ACAACGCGGTCAACGGGGTCACACTTAAAGAGGGA-CTGCAAAAAT---- 1438
|.||||.|.|..||||.| ||| | || |||||||
BPUM_1652 1310 ATAACGTGTTTGACGGAG--------AAA-----ATCT-CAAAAATAAAC 1345
BSNT_01159 1439 ---------TCGCCAAG-GTC---------ATTCTTCCGAAACCATACGG 1469
|.||.||| ||| |||| |..||||||
BPUM_1652 1346 TCCTCTCTATGGCAAAGCGTCTAGACAACAATTC-------AGGATACGG 1388
BSNT_01159 1470 AACGTCATC-AAG--CGGAAGACGAACTCCAGCGCCACATGTACCGCCGG 1516
|| || || ||| .||.||||||...|||||.|||.|...|||.|||
BPUM_1652 1389 AA--TC-TCTAAGACAGGCAGACGATTACCAGCACCAAAATCACCACCG- 1434
BSNT_01159 1517 TAAC---CGTCAAATACGGCGAGCATTTCGCAAGATGGAGCAGAAAGAAA 1563
|| .||.|..|||||.||.||.|..|..|||||||...|.||.|||
BPUM_1652 1435 --ACTGTTGTTAGCTACGGAGATCACTATGTGAGATGGAAACGTAAAAAA 1482
BSNT_01159 1564 GTACTGAAGCCGAATGTTATCTACAAAACAAAAGAAGGCTACACATACAC 1613
|||.|.||.||.||||||.|.||...||||||..||||||||||.|||||
BPUM_1652 1483 GTATTAAAACCAAATGTTGTTTATTCAACAAAGCAAGGCTACACCTACAC 1532
BSNT_01159 1614 GACTGACAACTATGGTAGAATT-ACAAGTGTCAAAGCA---GACTTGCAG 1659
.||.||..||||.||..|.||| .||| .|||.||||| ||.||..|.
BPUM_1652 1533 AACCGATCACTACGGACGTATTGTCAA-AGTCCAAGCAAGTGATTTAAAA 1581
BSNT_01159 1660 CTGGGAGAAGCAAAACGAAACCAATATGCACAGACGAATGCTGGAAAGCC 1709
...|||||.|..|||.|||||||||||||.||..|.|||.|.||.|||||
BPUM_1652 1582 TACGGAGAGGTTAAAAGAAACCAATATGCCCAATCCAATTCAGGCAAGCC 1631
BSNT_01159 1710 CCAAGACCGAAAGCCCGACGATGACGGCGGCCATTTAATCGCCACCCAAT 1759
.||||||...|..||.|||||.||.||.|||||||||||.||....|
BPUM_1652 1632 ---GGACCGATTACTGGATGATGATGGAGGTCATTTAATCGCAACTATTT 1678
BSNT_01159 1760 TCAAAGGCTCAGGCCAGTTCGACAATATCGTGCCGATGAATTCTCAGATT 1809
|.|||||.||.||..|..|.||.||..|..|.|||||||||||.||.|||
BPUM_1652 1679 TTAAAGGGTCTGGGGATATTGATAACCTACTTCCGATGAATTCACAAATT 1728
BSNT_01159 1810 AATAGGAGTGGCGGGAAATGGTACAACATGGAGC---AAGTGTGGTCTAA 1856
|||.|.|||||.|||||||||||..|.||||||| ||..||.||||
BPUM_1652 1729 AATCGTAGTGGTGGGAAATGGTATCAGATGGAGCAGGAATGGTTGTCT-- 1776
BSNT_01159 1857 AGCTTTAAGTCAAAAA-----CCACCGAAACAGGTGACAGTTAAAATTAA 1901
|| |.|||||.| |..|||||| |.||..|.||..|.|||.|
BPUM_1652 1777 -GC----ACTCAAAGAGGTTCCGCCCGAAA-AAGTCTCTGTCTATATTGA 1820
BSNT_01159 1902 -------CAACATTTATGAGGGTGATTCTTTAAGACCTTCTAAATTTATT 1944
.|.||||.| ||.||.|||||.||||| |..|.|.
BPUM_1652 1821 GGCAGTCTACCATTCA-------GACTCCTTAAGGCCTTC---AGCTTTC 1860
BSNT_01159 1945 GTTGT---ATATAAAGTTGGGGATAAAGAACCTGTTAGAACAATCATTAA 1991
|..|| |||||||.|.|||| ||||.||...|||.|...|| ||.||
BPUM_1652 1861 GAAGTGAAATATAAAATAGGGG--AAAGCACAGATTATATTTAT-ATAAA 1907
BSNT_01159 1992 GAATAAAGCTGGGGGTTAA 2010
.|||.|...|||.||||||
BPUM_1652 1908 AAATGAGTATGGAGGTTAA 1926
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.