Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06100 and BPUM_1749
See
Amino acid alignment /
Visit
BSNT_06100 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:37
# Commandline: needle
# -asequence dna-align/BSNT_06100___mmsA.1.24716.seq
# -bsequence dna-align/BPUM_1749___mmsA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06100___mmsA-BPUM_1749___mmsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06100___mmsA-BPUM_1749___mmsA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06100___mmsA
# 2: BPUM_1749___mmsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1568
# Identity: 1009/1568 (64.3%)
# Similarity: 1009/1568 (64.3%)
# Gaps: 211/1568 (13.5%)
# Score: 3030.0
#
#
#=======================================
BSNT_06100___ 1 ATGGCAGAAATCAGA-----AAA--TTAAAAAACTACATCAACGGTGAAT 43
|||.| .|||.|||| ||| ||.|||||.||.||...|||..|||
BPUM_1749___m 1 ATGAC-CAAAACAGATGTACAAATGTTGAAAAATTATATTGGCGGACAAT 49
BSNT_06100___ 44 GGGTTGAAAGCA----------AAACAGA-TCAATATGAAGATGTCGTCA 82
||.||| ||||| ||||||| .||.||| || |
BPUM_1749___m 50 GGATTG-AAGCAGAAACTAGTCAAACAGAGGCAGTAT----AT------A 88
BSNT_06100___ 83 ATCCGGCGAC--GAAAGA-------AGTACTATGCCAAGTGCCGATTTCT 123
|.||.||.|| |.|||| || ||||||||.||||.
BPUM_1749___m 89 ACCCAGCTACTGGCAAGATCATCGCAG---------AAGTGCCGCTTTCA 129
BSNT_06100___ 124 ACAAAAGAGGATATTGA-------TTAC--GCAGCGCAAACGGCGGCTGA 164
||||||.|.|||.|.|| .||| ||||||||| ||
BPUM_1749___m 130 ACAAAAAAAGATGTCGAACGTGCGGTACAGGCAGCGCAA---------GA 170
BSNT_06100___ 165 AGCGTTTGAAACATGGTCAAAGGTGGCGGTTCCGCGCCGTGCCAGAATTC 214
|||.|||...||.|||||.||...|.|.|||||.||||||||..|.|||.
BPUM_1749___m 171 AGCCTTTACCACTTGGTCGAAAACGCCCGTTCCCCGCCGTGCACGCATTT 220
BSNT_06100___ 215 TATTTAACTTTCAGCAGCTGCT-GTCCCAGCATAAA---GAAGAACTGGC 260
|||||||.|..||.|||.|.|| || ..|.||| ||.||.|||||
BPUM_1749___m 221 TATTTAAATACCAACAGTTACTCGT----TGACAAATGGGATGAGCTGGC 266
BSNT_06100___ 261 TCATCTGATTACCATTGAAAACGGAAAAAACACAAAAGAAGCTTTAGGTG 310
|.|.||..|.||.||.|||||||||||||.||..|..|||||...|||.|
BPUM_1749___m 267 TGAACTCGTAACGATGGAAAACGGAAAAAGCATCACTGAAGCAAAAGGAG 316
BSNT_06100___ 311 AAGTGGGACGCGGGATTGAAAACGTAGAGTTCGCCGCTGGAGCACCTTCC 360
|||||...||||||||||||...||.||.||.||||||||.|||||..||
BPUM_1749___m 317 AAGTGCAGCGCGGGATTGAATGTGTCGAATTTGCCGCTGGTGCACCAACC 366
BSNT_06100___ 361 CTGATGATGGGTGACTCACTTGCTTCC----ATCGCAAC-GGACGTTGAA 405
.|.|||||||| .|..||.| |.|| ||||||.| |||| |.|||
BPUM_1749___m 367 TTAATGATGGG-AAAACAAT---TACCAGATATCGCATCTGGAC-TCGAA 411
BSNT_06100___ 406 GC-GGCGAACTACCGTTACCCAATCGGAGTTGTCGGCGGAATCGCGCCAT 454
.| ||| |..|||||.||.|||||.||.||..||||||||||..|.||||
BPUM_1749___m 412 TCTGGC-ATGTACCGCTATCCAATTGGCGTCATCGGCGGAATTACACCAT 460
BSNT_06100___ 455 TCAACTTCCCGATGATGGTTCCTTGCTGGATGTTCCCGATGGCGATCGCG 504
|.|||||.|||||||||||||||||||||||||||||..|.||.||.||
BPUM_1749___m 461 TTAACTTTCCGATGATGGTTCCTTGCTGGATGTTCCCACTTGCCATTGC- 509
BSNT_06100___ 505 CT-CGGCAACACATTTATTTTAAAGCCATCTGAGCGGACTCCGCTGTTAA 553
|| |||.||.||.|||.|||||||.||.||.|||||.||.|||.|..|..
BPUM_1749___m 510 CTGCGGAAATACGTTTGTTTTAAAACCTTCAGAGCGCACGCCGATTCTTG 559
BSNT_06100___ 554 CAGAGAAATTGGTTGAGCTTTTTGAAAAAGCGGGCCTTCCGAAAGGGGTA 603
|.|....|||.|..||..|.||||||.||||.||.|||||.||||||||.
BPUM_1749___m 560 CCGCACGATTAGCCGAATTATTTGAAGAAGCAGGTCTTCCAAAAGGGGTT 609
BSNT_06100___ 604 TTCAACGTCGTATACGGTGCGCATGACGTTGTGAACGGCATCCTCGAGCA 653
.|||||.|.||..|.||.||.|||||.||.||.||.||..|.||.||.||
BPUM_1749___m 610 CTCAACATTGTCAATGGAGCTCATGATGTCGTCAATGGTCTGCTTGAACA 659
BSNT_06100___ 654 TCCCGAAA--TTAAAGCGATTTCATTTGTAGGCTCCAAGCCAGTCGGCGA 701
||.||| |.|||||.|||||||||||.|||||..|||||||.|..||
BPUM_1749___m 660 --CCAAAAGGTCAAAGCCATTTCATTTGTCGGCTCTCAGCCAGTTGCAGA 707
BSNT_06100___ 702 ATACGTCTACAAAAAAGGAAGCGAACACTTAAAACGCGTTCAATCTCTGA 751
|||||||||.||||||||.|..||.||....|||||.||.|||.|.||..
BPUM_1749___m 708 ATACGTCTATAAAAAAGGCACAGAGCATGGCAAACGTGTCCAAGCACTTG 757
BSNT_06100___ 752 CTGGTGCGAAAAACCATACGATTGTCTTGAACGATGCGAATCTTGAAGAC 801
|.||.||.|||||.||..|.||||||.|.||.|||||..||.| ||||
BPUM_1749___m 758 CAGGAGCAAAAAATCACTCCATTGTCCTTAAAGATGCAGATTT---AGAC 804
BSNT_06100___ 802 ACGGTCAC-AAAC--ATCGTCGGAGCTGCCTTCGGTTCTGCCGGTGAACG 848
.|.|..|| |||| |||.|.||.||||||||.||.||.||.||.||.||
BPUM_1749___m 805 GCAGCAACGAAACAAATCATTGGTGCTGCCTTTGGATCAGCAGGAGAGCG 854
BSNT_06100___ 849 CTGCATGGCTTGTGCGGTTGTGACAGTTGAAGAAGGAATCGCCGATGA-- 896
|||||||||....||.|||||..||||.|||||||.|.|.||.|||||
BPUM_1749___m 855 CTGCATGGCCGCGGCCGTTGTCGCAGTGGAAGAAGAAGTGGCAGATGATC 904
BSNT_06100___ 897 --ATTTATGGCGAAGCTGCAGGAAAA--AGTGG----------CGGACAT 932
|||.| |||| ||||| ||.|| |
BPUM_1749___m 905 TCATTCA---------------AAAATTAGTGGATGAATCGAACGAAC-T 938
BSNT_06100___ 933 TAAAATCGGTAACGGCCTTGATGACGGCGT-GTTCTTAGGACCGGTGATT 981
|...||.||.|||||..|..||||.|..|| .||||| ||.||.||.|||
BPUM_1749___m 939 TGTCATTGGAAACGGTATAAATGAAGAGGTCTTTCTT-GGTCCAGTCATT 987
BSNT_06100___ 982 CGCGAAGACAACAAGAAGCGCACGC-TCAGCTATA-------TCGAAAAA 1023
||.||.||..|.|||.||||.|||| ||| ||| || |
BPUM_1749___m 988 CGAGAGGAACATAAGGAGCGAACGCTTCA---ATACATTCAGTC-----A 1029
BSNT_06100___ 1024 GGCCTTGAAGAAGGTGCCAGACTCGTATGTGACGG-----------ACGT 1062
||..||||||||||.||.||.|||.|..|.||.|| |||.
BPUM_1749___m 1030 GGGATTGAAGAAGGCGCAAGTCTCATTCGAGATGGCAGGAAAGATCACGA 1079
BSNT_06100___ 1063 GA-AAATGTGTCTGACGACGGCTACTTTGTCGGCCCGACGATCTTTGACA 1111
.| ||||| || .|.||.||.||.||.||.||.||||||||||||.
BPUM_1749___m 1080 AACAAATG-----GA-AAAGGGTATTTCGTTGGACCAACGATCTTTGACC 1123
BSNT_06100___ 1112 ATGTCACAACAGAGATGACGATCTGGAAAGATGAAATTTTCGCTCCGGTC 1161
||||.||||...|.||||..||.|||.|.||.||.||||||||.||.|||
BPUM_1749___m 1124 ATGTGACAAATCAAATGAAAATTTGGCAGGACGAGATTTTCGCCCCAGTC 1173
BSNT_06100___ 1162 TTATCTGTCATCCGTGTGAAAAAC------CTGAAAGAAGCGATTGAAAT 1205
|||||..|..|.||||| | |||..|||||||||.||..|
BPUM_1749___m 1174 TTATCAATTGTACGTGT------CTCTTCACTGGCAGAAGCGATCGACCT 1217
BSNT_06100___ 1206 CGCCAATAAGTCTGAGTTTGCGAACGGTGCCTGCTTGTTCACATCCAAT- 1254
..|.|||.|.||..|.||||||||||||||||||.|||.||||..||.|
BPUM_1749___m 1218 GTCTAATCAATCAAAATTTGCGAACGGTGCCTGCCTGTACACAGACAGTG 1267
BSNT_06100___ 1255 --TCAAACGCAATCCGCTACTTCCGTGAAAACATTGATGCGGGAATGCTA 1302
||||.| |||.|..|.||.||.||||||||.||.||.||.|||||.
BPUM_1749___m 1268 CATCAAGC---ATCAGAGAATTTCGCGAAAACATCGAAGCAGGGATGCTC 1314
BSNT_06100___ 1303 GGCATCAACCTTGGTGTGCCGGCTCCAATGGCGTTCTTCCCATTCTCAGG 1352
|||.||||..|||||||.||.||.||||||||.||.|||||.||.||.||
BPUM_1749___m 1315 GGCGTCAATATTGGTGTTCCCGCACCAATGGCATTTTTCCCGTTTTCCGG 1364
BSNT_06100___ 1353 TTGGAAATCTTCATTCTTTGGAACG-----CTGCATGCGAACGGAAAAGA 1397
.|||||...|||.|||| ||| .||||.||.||.||||.|||
BPUM_1749___m 1365 CTGGAAGGATTCTTTCT-----ACGGGGATTTGCACGCCAATGGAACAGA 1409
BSNT_06100___ 1398 CAGCGTCGACTTCTATACACGTAAAAAAG-TGGTAACGGCAAGATTTCCG 1446
|.|.||.||.||.||.|||.| ||||||| ||||.||.||..|.|.|
BPUM_1749___m 1410 CGGAGTGGAGTTTTACACAAG-AAAAAAGATGGTGACCGCTCGTTAT--- 1455
BSNT_06100___ 1447 GCACCTGATTTCAACTAA 1464
|..|||
BPUM_1749___m 1456 --ATGTGA---------- 1461
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.