Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04410 and BPUM_1751

See Amino acid alignment / Visit BSNT_04410 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:57
# Commandline: needle
#    -asequence dna-align/BSNT_04410___amyC.1.24716.seq
#    -bsequence dna-align/BPUM_1751___amyC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04410___amyC-BPUM_1751___amyC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04410___amyC-BPUM_1751___amyC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04410___amyC
# 2: BPUM_1751___amyC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 881
# Identity:     576/881 (65.4%)
# Similarity:   576/881 (65.4%)
# Gaps:         100/881 (11.4%)
# Score: 1697.0
# 
#
#=======================================

BSNT_04410___      1 ATG----AGAGCCGCC------CGTACAAAAAGCATGCGGATCATTACGC     40
                     |||    |.|    ||      ||||..||.|| |||       .|||.|
BPUM_1751___a      1 ATGGAAAATA----CCTTTAAACGTAAGAAGAG-ATG-------GTACAC     38

BSNT_04410___     41 --TTCTTGCAGCCATTGTG--GCCTGTGC-GCATTTTATTCCTTTTTATA     85
                       |.|||   |||.||.||  |.|.|||| .|||.|.|||||.|||||||
BPUM_1751___a     39 CGTCCTT---GCCCTTTTGGTGACAGTGCTTCATCTCATTCCATTTTATA     85

BSNT_04410___     86 TCCTGCTGACCACTTCATTGAAAGCAAAAGGAGACTACAGTTCGAAATGG    135
                     ||.|||||||.||.|||||.||.|.||.||||||.|..|||||.||.|||
BPUM_1751___a     86 TCTTGCTGACGACATCATTCAAGGGAATAGGAGATTTTAGTTCAAAGTGG    135

BSNT_04410___    136 ATATTTCCAGCCGACATCTCCTTTCAT-----AATTTTTCAGA-GGCGTG    179
                     .|.||||||    |.|.|.|  |||||     ||..||||..| |||.||
BPUM_1751___a    136 CTGTTTCCA----AAAGCGC--TTCATCTTGAAAACTTTCGCACGGCATG    179

BSNT_04410___    180 G---GAGCGCGCTTCGCTAGGAAACTCTTTTATAAACACCATGATCATCA    226
                     |   |||   ||...|||.||..|.||.|||.|.||.||..|||||||.|
BPUM_1751___a    180 GACAGAG---GCACAGCTTGGTCAGTCCTTTTTGAATACTGTGATCATTA    226

BSNT_04410___    227 CAGGTTTT----TCTGCCTTGTTAT---TAAT-TATATTCGGCTCACTTG    268
                     ||    ||    |||||  || |||   |.|| |.|.|| ||.||.||||
BPUM_1751___a    227 CA----TTCAGCTCTGC--TG-TATGCCTCATCTTTCTT-GGTTCCCTTG    268

BSNT_04410___    269 CCGCCTACCCGCTTGCCCGGCGGGAA--ACGAAACTGAATAAAGCCGTTT    316
                     |.|||||.|||||.||..|  |.|||  ||.||.||.||||||||.||.|
BPUM_1751___a    269 CAGCCTATCCGCTCGCAAG--GAGAAGCACAAAGCTAAATAAAGCAGTGT    316

BSNT_04410___    317 TTGCCTTGCTGATTTCCATTATGATCATCCCTCCGTTAACGTCCATGGTT    366
                     .||..||..|.|||.|.||||||.||||.||.||..|.||..||.|.||.
BPUM_1751___a    317 ATGTTTTATTCATTGCTATTATGGTCATTCCACCACTCACAGCCCTTGTC    366

BSNT_04410___    367 CCTTTGTACCGAATGGTCGTGGACGCCGGAATGGTCAATACACACGCAAT    416
                     ||..|.||...|||||||||..|...|||.|||.|.||.||..|...|||
BPUM_1751___a    367 CCGCTCTATAAAATGGTCGTTCAAATCGGGATGATGAACACCTATCAAAT    416

BSNT_04410___    417 CGCCATTTTCATCAATACAGCGGCTTACATGCCTTTAACCGTATTCTTAT    466
                     |||.|||||.|..|||...||.||||...||||..||||..|.|||||||
BPUM_1751___a    417 CGCTATTTTAAATAATGTTGCTGCTTTTTTGCCGCTAACGATTTTCTTAT    466

BSNT_04410___    467 ATTCAGGCTTTATCCGATCGACCATTCCAAAAGAGCTTGAAGAAGCTGCA    516
                     |..|||||||||||||.||||||||||||||.||||||||||||||.||.
BPUM_1751___a    467 ACGCAGGCTTTATCCGGTCGACCATTCCAAAGGAGCTTGAAGAAGCAGCC    516

BSNT_04410___    517 AGAATTGACGGCGCAGGCATGCTGAAAATCTTTTTTACGATTGTGTTTCC    566
                     .|.|||||.||.||.||.|..||.|...|.|||||.||.||.||.||.||
BPUM_1751___a    517 CGTATTGATGGAGCGGGGACACTTAGGGTTTTTTTCACCATCGTTTTCCC    566

BSNT_04410___    567 TCTGCTGAAGCCGATCACTGCGACCATCTGT----ATTATTTCTTGTGTC    612
                     .||.|||||.||.||.||.|    |.||.||    ||.|||.|.|||||.
BPUM_1751___a    567 ACTTCTGAAACCTATTACCG----CTTCGGTTTTAATCATTGCCTGTGTG    612

BSNT_04410___    613 TTTATTTGGAACGACTATCAATTTGCCATTTTCTTTTTACAAGATCAAAA    662
                     |.|||||||||||||||||||||||||||.|||||||||||||||.|..|
BPUM_1751___a    613 TATATTTGGAACGACTATCAATTTGCCATCTTCTTTTTACAAGATAAGGA    662

BSNT_04410___    663 GGTTCAGACATTAACAGTAGCC--ATGGCAGGTTTTTTCGGAGAAAA--C    708
                     |.|.||.|||.|.|||||.|||  ||..||  ||||||.||..||||  .
BPUM_1751___a    663 GATGCATACACTCACAGTCGCCTTATCCCA--TTTTTTTGGTCAAAATCA    710

BSNT_04410___    709 GCAAACAACCTTCATTTA------GTTGCCGCAGCGGCACTTATGGCAAT    752
                     |||        |||.|||      ||||..||.||.||.||.||.||.||
BPUM_1751___a    711 GCA--------TCAGTTACAGCTCGTTGGTGCCGCTGCGCTCATTGCGAT    752

BSNT_04410___    753 GCTGCCGATGGTTGTTCTGTTTTTGGCGCTGCAAAAATACTTTATTGCCG    802
                     ||||||.|||||..|..|||||||...|.||||||||||.|||||.||.|
BPUM_1751___a    753 GCTGCCAATGGTAATGATGTTTTTACTGTTGCAAAAATATTTTATCGCAG    802

BSNT_04410___    803 GCCTGTCTTCCGGAGCGGT-AAAGGGTTAA-    831
                     |.||.||....||..|.|| |||||||  | 
BPUM_1751___a    803 GGCTTTCACAAGGCTCTGTCAAAGGGT--AG    831


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04410 and BPUM_1751

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
