Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05139 and BPUM_1803

See Amino acid alignment / Visit BSNT_05139 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:48
# Commandline: needle
#    -asequence dna-align/BSNT_05139___yvbT.1.24716.seq
#    -bsequence dna-align/BPUM_1803___yvbT.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05139___yvbT-BPUM_1803___yvbT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05139___yvbT-BPUM_1803___yvbT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05139___yvbT
# 2: BPUM_1803___yvbT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1071
# Identity:     722/1071 (67.4%)
# Similarity:   722/1071 (67.4%)
# Gaps:          96/1071 ( 9.0%)
# Score: 2242.0
# 
#
#=======================================

BSNT_05139___      1 -----------ATGTCTAA--CAACC--------AACGCAAAGATACCTT     29
                                ||.|.|.|  |||.|        |.||||.||    |||
BPUM_1803___y      1 ATGGGGACATCATTTATGAGTCAATCAGTTTTAAAGCGCACAG----CTT     46

BSNT_05139___     30 GCTTTCTGTCTTGAATTTAT-CTCCGGTTGT-TCAG--GGAGGAACGATT     75
                       .|||.||.||.||||||| |||    ||| .|||  ||.||.||.|||
BPUM_1803___y     47 --ATTCCGTTTTAAATTTATCCTC----TGTGACAGAAGGCGGTACCATT     90

BSNT_05139___     76 GCAGAATCATTCCGAA-ACAGCATGGACTTGGC-------GCGCCGGGCA    117
                     ...||||| ||..||| |.||.|||.|.||.||       |||       
BPUM_1803___y     91 AAGGAATC-TTTTGAACATAGTATGAATTTAGCAAAAAAGGCG-------    132

BSNT_05139___    118 GAGGAATGGGGCTATCACCGTTACTGGCTTGCTGAACATCATAATATAGA    167
                     |||.|.|||||.|||||..|.||||||||.||.|||||.||||||||.||
BPUM_1803___y    133 GAGAAGTGGGGTTATCATAGATACTGGCTCGCAGAACACCATAATATGGA    182

BSNT_05139___    168 AGGTGTTGCAAGCTCTGCCACCGCAGTTTTGATTGGCCATATTGCCGGAG    217
                     ||||||||||||.||.||.||..|.|||||.||.||..|||||||.||.|
BPUM_1803___y    183 AGGTGTTGCAAGTTCAGCAACGTCCGTTTTAATAGGGTATATTGCTGGCG    232

BSNT_05139___    218 GCA-CGAAGAAAATCCGCGTCGGTTCCGGCGGCATTATGCTCCCGAACCA    266
                     |.| |||| |||||.||.||.||.||.|||||.||||||||.||.|||||
BPUM_1803___y    233 GAACCGAA-AAAATTCGAGTAGGATCTGGCGGAATTATGCTGCCAAACCA    281

BSNT_05139___    267 CTCTTCATTAGTCATTGCTGAACAATTCGGCACACTGGAAACACTGTATC    316
                     |||||||.|.||.|||||||||||||||||||||||.||.|||.|.||||
BPUM_1803___y    282 CTCTTCACTTGTTATTGCTGAACAATTCGGCACACTTGAGACATTATATC    331

BSNT_05139___    317 CCGGGCGGATTGATCTGGGGCTTGGACGTGCGCCGGGAACAGACCAATTG    366
                     |.|||.|.||||||.|.||.||||||.|.||.||.||.|||||.||.||.
BPUM_1803___y    332 CGGGGAGAATTGATTTAGGTCTTGGAAGAGCACCAGGGACAGATCAGTTA    381

BSNT_05139___    367 ACAGCCAGAGCGCTCCGAAG-AAACATCAACAGCGGTGAGGATTTTCCAG    415
                     ||.||.||.||.||..||.| ||.|.|| |.|..||.||.|||||.||.|
BPUM_1803___y    382 ACGGCAAGGGCACTTAGACGTAATCTTC-ATAATGGAGAAGATTTCCCTG    430

BSNT_05139___    416 AACAATTAGAGGAACTGC-GCAATTATTTTAAACC-----GTCAGG--AA    457
                     ||||..||||.|||||.| |||| |||||.|||||     |.||||  ||
BPUM_1803___y    431 AACAGCTAGAAGAACTTCGGCAA-TATTTCAAACCAACCGGACAGGTCAA    479

BSNT_05139___    458 ATGTGCGCAATCAAGTTCGCGCCATTCCCGGAGAGGGCATAGATGTGCCG    507
                     |       ||.||.||..|.|||.||||.||||||||..||||..|.|||
BPUM_1803___y    480 A-------AAACATGTAAGAGCCGTTCCAGGAGAGGGACTAGACATTCCG    522

BSNT_05139___    508 ATTTGGCTGCTGGGCTCAAGCGGCTTCAGCGCCCGTCTGGCTGGCGAACT    557
                     ||||||||.||.||.|||||.||.||.|||||..|.||.||.||.||.||
BPUM_1803___y    523 ATTTGGCTACTTGGTTCAAGTGGATTTAGCGCAAGACTTGCAGGAGAGCT    572

BSNT_05139___    558 TGGTCTTCCGTTTGCGTTCGCGGCCCATTTCTCACCGGCGAATACGGTTC    607
                     |||..|.||.|||||.||.|||||.|||||.|||||....|||||..|||
BPUM_1803___y    573 TGGATTGCCATTTGCATTTGCGGCACATTTTTCACCTAAAAATACAATTC    622

BSNT_05139___    608 CCGCTTTGGAGCTGTACCGCAATTCCTTCACGCCGTCAGACGTGCTCGAC    657
                     |.|||||.||||||||..|..|.||.||.|...|.||.||.|||.|..|.
BPUM_1803___y    623 CTGCTTTAGAGCTGTATAGACAGTCATTTAGAACTTCTGATGTGTTAAAA    672

BSNT_05139___    658 GAACCGTATGCGATGGTCGGTGTCACCATTATCGCGGCAGATACAAACGA    707
                     ||.||.|||||.|||||.||.||.||...|.|.||.|||||| ||||| |
BPUM_1803___y    673 GAGCCTTATGCCATGGTGGGGGTGACAGCTTTTGCTGCAGAT-CAAAC-A    720

BSNT_05139___    708 GAAAGCGCAGCACCTT--GCGACTTCGCATTATCAAAGGTTTCTTGA-TC    754
                     ||..|.||.|.|..||  ||.||.||.||||||||..||||| ||.| ||
BPUM_1803___y    721 GAGCGAGCTGAATATTTGGCAACGTCTCATTATCAGCGGTTT-TTAAGTC    769

BSNT_05139___    755 TTGTCCGCGGTACGCC--GAACCAGCTTAAACCGCCTGTTGAGGATATGG    802
                     |..|.||...|||.||  |||  |.||.|||.|||||||.||...|||||
BPUM_1803___y    770 TCATTCGAAATACCCCGGGAA--AACTCAAAGCGCCTGTCGACAGTATGG    817

BSNT_05139___    803 ACCAAATCTGGAGCCCGTATGAAAAAGCGATGGTCAATGAGCAGCTGAGC    852
                     ||....|.|||||.||.|||||||||||||||||..||||.||..|.||.
BPUM_1803___y    818 ACGGTCTTTGGAGTCCATATGAAAAAGCGATGGTGGATGAACAATTAAGT    867

BSNT_05139___    853 TCCACGATTGTCGGAGGTCCGGAAGAAGTG-AAGGCGAAGCTT-GAAGAT    900
                     ||.||.||..||||||.|..||||.|.||| ||.|.|||  || ||||..
BPUM_1803___y    868 TCGACAATGATCGGAGATAAGGAAAAGGTGAAAAGAGAA--TTGGAAGCC    915

BSNT_05139___    901 TTCGTCAAAACGACACAGGCTGACGAAATTATGGTTAACTCAGAAACCTT    950
                     ||.||..||.|.||.||.||.||||||.|.|||.||||.||.||.|..||
BPUM_1803___y    916 TTTGTTGAAGCCACTCAAGCAGACGAAGTGATGATTAATTCGGATATGTT    965

BSNT_05139___    951 TGAACACGCAGACAGAATGCGTTCGTTTGAAATCATCGCTGACGTTT---    997
                     |||.||...|||.|||||||||||.|.||||||.||||..||..|||   
BPUM_1803___y    966 TGATCATCAAGAAAGAATGCGTTCATATGAAATTATCGGCGAGATTTTCC   1015

BSNT_05139___    998 -------GGAACAACAGATAA   1011
                            |.||.|| |.||||
BPUM_1803___y   1016 AAGAGGCGCAAGAA-AAATAA   1035


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