Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01008 and BPUM_2117
See
Amino acid alignment /
Visit
BSNT_01008 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:40
# Commandline: needle
# -asequence dna-align/BSNT_01008___ydhQ.1.24716.seq
# -bsequence dna-align/BPUM_2117___ydhQ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01008___ydhQ-BPUM_2117___ydhQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01008___ydhQ-BPUM_2117___ydhQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01008___ydhQ
# 2: BPUM_2117___ydhQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 773
# Identity: 482/773 (62.4%)
# Similarity: 482/773 (62.4%)
# Gaps: 109/773 (14.1%)
# Score: 1342.5
#
#
#=======================================
BSNT_01008___ 1 ATGAATAAATACGAAATTATTGCAAATGAAATGAGAAATAGAATTAAAAA 50
|||||.||.||.|||.|.|||.||.|.|||||.|||||..||| ||..||
BPUM_2117___y 1 ATGAAAAAGTATGAACTCATTTCAGAAGAAATCAGAAAACGAA-TAGGAA 49
BSNT_01008___ 51 TAACGTA-TATCC-GATCGATCAGCCCATTCCTGATGAAGTATCTCTTGC 98
.|.|.|| ||||| || .|||||.||||||||.||||||...||.|||||
BPUM_2117___y 50 CAGCATATTATCCAGA-AGATCAACCCATTCCAGATGAAAACTCGCTTGC 98
BSNT_01008___ 99 AAAAGAATTTAACTCAAGCCGCATGACGATGAAGAGAGCCTTGGATAATT 148
....||||||.|.|..|||||.||||||||||||.|.||..|.|||..|.
BPUM_2117___y 99 CGCTGAATTTCAATGCAGCCGAATGACGATGAAGCGTGCGCTCGATCTTC 148
BSNT_01008___ 149 TAGTTGCCGAGGGTCTGCTGTTTAGAAAACGCGGCCATGGCACGTTTATT 198
|.||.||.||.||||||||.|||||||||.|.||.||.||.||.||||||
BPUM_2117___y 149 TCGTAGCAGAAGGTCTGCTCTTTAGAAAAAGAGGACACGGTACATTTATT 198
BSNT_01008___ 199 AT-----------TCAATCTGCAATACAGGATGACCATGTACATGTAGTC 237
.| |||||| .||| |.|.|| || |||| |||
BPUM_2117___y 199 GTGAAGGCAGCGCTCAATC-------AAGG--GGCTAT-TA-ATGT-GTC 236
BSNT_01008___ 238 AGCA-ATGAGATTCTCGGATTGACCAACTTGCTGAAAGATAAAAAAATC- 285
||.| ||||.|.|...|||||.||.||..|..||...||||||||..||
BPUM_2117___y 237 AGGACATGAAAATAAAGGATTTACAAAAGTCATGGCGGATAAAAACGTCA 286
BSNT_01008___ 286 -----CAAAGCAAGGTCATTCAGTTTAAAGTGCAATTTCCCACTGAGGAA 330
|||| |||||||.|||.|.||.||.|||||.|...|.||.
BPUM_2117___y 287 CGACTCAAA------TCATTCACTTTGATGTCCATTTTCCAAGCAAAGAG 330
BSNT_01008___ 331 GTGGCCGCCCATTTGTCTATTGATCAGAAAACACCGGTTTATTATGTCGT 380
|||||.|||||..|.||.||.||.|..|..|||||..|||||.|..||.|
BPUM_2117___y 331 GTGGCAGCCCACCTATCCATAGACCCCACCACACCCATTTATGACATCAT 380
BSNT_01008___ 381 TCGGCTGCGAATTGTAGAAGGTGAACCCTATGTATTAGAAAAAACATATA 430
.||.||.||..||||.||.|..||.||.|||||.|||||||||||.|.||
BPUM_2117___y 381 CCGTCTCCGTCTTGTGGACGAGGAGCCATATGTGTTAGAAAAAACGTTTA 430
BSNT_01008___ 431 TGCC-----GACTCATTTAATACCGGGCATTAATGACGATGTCCTTCAT- 474
|||| ..||||||.| |||.||..||||.||.||.|| ||
BPUM_2117___y 431 TGCCCGTCAATCTCATTAA-----GGGGATAGATGAAGAGGTTCT--ATT 473
BSNT_01008___ 475 --GATTCGATCTACAAT--CATATTACAAATGTGCTGCAGCTCAAAATCG 520
|| ||.|||||...| ||||| ||||||...||.|..|.|||.|.|
BPUM_2117___y 474 GGGA-TCAATCTATGGTTACATAT--CAAATGATTTGAATTTAAAAGTGG 520
BSNT_01008___ 521 CCGGAACGCATCGGAAAATCAGAGC--CTGCAAATCTGATCATATTGACC 568
|.|||.|.|||...|||||.||||| || |||||.|||.|..|.||.|
BPUM_2117___y 521 CAGGAGCACATAAAAAAATTAGAGCGGCT--AAATCAGATGAGCTGGATC 568
BSNT_01008___ 569 AGCAGCATCTGGGCTGCAAACAGGATGATCCAA---------TTCTTGAA 609
||||..||.|.||||| |||.|||| |.||.|||
BPUM_2117___y 569 AGCAATATTTAGGCTG---------TGACCCAACGGACCCTGTGCTAGAA 609
BSNT_01008___ 610 GTGGAACATGTGGGCTT-CTTAGATACCGGGATTCCATTTGAATATTCCT 658
||.||.||.|| .|||| .|||.|.||.|||...||.|||||.||.||||
BPUM_2117___y 610 GTCGAGCAGGT-TGCTTATTTAAACACAGGGCGGCCGTTTGAGTACTCCT 658
BSNT_01008___ 659 TTTCACGTCATCGGCATGACAAGTTTGTTGTGACTTCT------------ 696
||...|.||||||..||||.||||| .|||||.|
BPUM_2117___y 659 TTAGCCATCATCGCTATGATAAGTT-----CGACTTTTCAACGGTCGAAA 703
BSNT_01008___ 697 ----GTAAACATACGG-CGCTGA 714
|.||||| || ||.|.|
BPUM_2117___y 704 TTACGAAAACA---GGACGTTAA 723
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.