Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03553 and BPUM_2128

See Amino acid alignment / Visit BSNT_03553 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:05
# Commandline: needle
#    -asequence dna-align/BSNT_03553___yqjG.1.24716.seq
#    -bsequence dna-align/BPUM_2128___oxaA2.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03553___yqjG-BPUM_2128___oxaA2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03553___yqjG-BPUM_2128___oxaA2.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03553___yqjG
# 2: BPUM_2128___oxaA2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 912
# Identity:     540/912 (59.2%)
# Similarity:   540/912 (59.2%)
# Gaps:         177/912 (19.4%)
# Score: 1518.0
# 
#
#=======================================

BSNT_03553___      1 TTGTTAAAAACATATCAAAAACTTTTGGCTATGGGTATCTTTTTGATCGT     50
                     |||               ||||.||    |||   ||.|..||||..|| 
BPUM_2128___o      1 TTG---------------AAACGTT----TAT---TAACGATTTGTACG-     27

BSNT_03553___     51 A--TTATGCTCGGGCAATG-------------CTGCATTTGCAGCGACTA     85
                     |  |||||.|    .||||             ||||.|||||||      
BPUM_2128___o     28 ACTTTATGTT----TAATGATGATTGCCTCACCTGCTTTTGCAG------     67

BSNT_03553___     86 ATCAGGTGGGAGGCCTCAGCAACGTA-------------GGTTTTTTCCA    122
                       ||.|||||      ||  ||||.|             ||.||||||||
BPUM_2128___o     68 --CAAGTGGG------CA--AACGAATGCGAGCTCTGATGGGTTTTTCCA    107

BSNT_03553___    123 CGATTATTTAATCGAACCGTTTTCCGCTCTGCTTAAGGGTGTTGCCGGGC    172
                     ..|||||||..||.|.||.|||||.|..|||.|||     .|||.|..||
BPUM_2128___o    108 TCATTATTTTGTCCAGCCTTTTTCGGAGCTGATTA-----TTTGGCTTGC    152

BSNT_03553___    173 -----TGTTTCACGGAGAATACGGACTCTCTATTATCCTCGTAACCATTA    217
                          |.||.||.|..||.||.||..|.||.|||||..||||.||..|.|
BPUM_2128___o    153 GAACTTCTTCCATGATGATTATGGTTTATCGATTATGTTCGTGACTTTGA    202

BSNT_03553___    218 TTGTGCGTATAGTTG-TATTGCCTTTGTTTGTCAATCAGTTCAAAAAACA    266
                     |.||.|||.| |.|| |.||.|||.|.||||..||.||.||.|||||.||
BPUM_2128___o    203 TCGTCCGTCT-GCTGATTTTCCCTCTTTTTGCGAACCAATTTAAAAAGCA    251

BSNT_03553___    267 GCGCATCTTCCAAGAGAAAATGGCCGTTATTAAACCTCAGGTTGACAGTA    316
                     ..|..|..|.||.|||||.|||||..|..|.||||||||..|||||...|
BPUM_2128___o    252 AAGAGTGATGCAGGAGAAGATGGCACTGGTGAAACCTCAAATTGACGACA    301

BSNT_03553___    317 TCCAGGTTAAATTGAAAAAGACGAAGGACCCTGAAAAACAAAAAGAGCTG    366
                     |.||....||||||||.||.|||||.||.|||||||||||||||||.||.
BPUM_2128___o    302 TTCAAAGCAAATTGAAGAAAACGAAAGAACCTGAAAAACAAAAAGAACTA    351

BSNT_03553___    367 CAAATGGAAATGATGAAGCTGTATCAAGAGAACAACATCAATCCGCTTGC    416
                     |||||||||||||||||..|.||..||||||||||..|.||.||.||.||
BPUM_2128___o    352 CAAATGGAAATGATGAAAGTATACAAAGAGAACAATGTGAACCCACTAGC    401

BSNT_03553___    417 GATGGGCTGTCTTCCAATGCTGATTCAGTCTCCGATTATGATTGGGCTTT    466
                     .|||||||||||.||.|||||.|||||...|||.|||.|..||||..|||
BPUM_2128___o    402 AATGGGCTGTCTGCCTATGCTAATTCAAATTCCAATTGTTCTTGGCTTTT    451

BSNT_03553___    467 ATTACGCGATTCGCTCAACACCTGAAATTGCGTCACACTCGTTTCTATGG    516
                     |.|..|||||.|||||.||||||||.|||||..||||.|||||.||||||
BPUM_2128___o    452 ACTCAGCGATCCGCTCTACACCTGAGATTGCAACACATTCGTTCCTATGG    501

BSNT_03553___    517 TTCAGTTTAGGGCAATCTGATAT-----TCTC-ATGTCCCTTAGTGCAGG    560
                     ||.|..|||||.|||.|.|||.|     ||.| ||.|.|      |||||
BPUM_2128___o    502 TTTAACTTAGGACAAACCGATCTATTGGTCGCGATCTTC------GCAGG    545

BSNT_03553___    561 GATTATGTATTTTGTCCAAGCCTATATCGCTCAAAAACTGAGCGCGAAAT    610
                     ...|||||||||..|.|||...|||.|..|.||||.|.|   .|||||  
BPUM_2128___o    546 CGCTATGTATTTCTTGCAATTTTATGTTACGCAAAGATT---TGCGAA--    590

BSNT_03553___    611 ATTCCGCTGTCCCGCAAAACCCAGCGGCACAG--------------CAAT    646
                          ||..||..||   ||||||    ||||              ||| 
BPUM_2128___o    591 -----GCAATCAGGC---ACCCAG----ACAGAGGCTGCGCTAAAACAA-    627

BSNT_03553___    647 CCGCAAAATTGATGGTGT-TCATCTTCCCTGTAATGATGACGATTTTCTC    695
                       ||||||.|.|||| || |.||.|||||..|.||||||..|.||.|.||
BPUM_2128___o    628 --GCAAAAGTAATGG-GTATGATTTTCCCAATCATGATGCTGTTTATTTC    674

BSNT_03553___    696 GCTTAATGTTCCGGCAGCCCTTCCCCTGTACTGGTTTACAAGCGGACTGT    745
                     ..|.||||..||.||.||||||||..|.||||||.|.|||||.|||.|.|
BPUM_2128___o    675 AATCAATGCACCCGCTGCCCTTCCTTTATACTGGATGACAAGTGGATTAT    724

BSNT_03553___    746 TTTTGACAGTGCAAAACATCGTCCTTCAGATGACGCATCAT-----AAAA    790
                     |..|.|||||.||||..||  |..||...|||     ||||     ||||
BPUM_2128___o    725 TACTCACAGTCCAAACGAT--TATTTTGAATG-----TCATGTACCAAAA    767

BSNT_03553___    791 GTAAAAA--AACAGCCGCTCTTACTGAGTC--------------------    818
                     .|.||||  ||.||         |||||.|                    
BPUM_2128___o    768 ATCAAAATCAAAAG---------CTGAGACAAACGACCAAGCGAGCCCAG    808

BSNT_03553___    819 --GGTGAAATAA    828
                       |.|| |||||
BPUM_2128___o    809 CTGCTG-AATAA    819


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