Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03813 and BPUM_2295

See Amino acid alignment / Visit BSNT_03813 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:22
# Commandline: needle
#    -asequence dna-align/BSNT_03813___yqeM.1.24716.seq
#    -bsequence dna-align/BPUM_2295___yqeM.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03813___yqeM-BPUM_2295___yqeM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03813___yqeM-BPUM_2295___yqeM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03813___yqeM
# 2: BPUM_2295___yqeM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 798
# Identity:     522/798 (65.4%)
# Similarity:   522/798 (65.4%)
# Gaps:         108/798 (13.5%)
# Score: 1608.5
# 
#
#=======================================

BSNT_03813___      1 ATGATTTATCAAGGCTTTGCAAGTGTGTATGACGAGTTAATGTCACACGC     50
                     ||||||||||||||.||||||.||||||||||||||.|.|||.||||.||
BPUM_2295___y      1 ATGATTTATCAAGGGTTTGCAGGTGTGTATGACGAGCTCATGACACATGC     50

BSNT_03813___     51 GCCTTACGATCAATGGACAAATTGGAT--TGAAGCATCTCTCCCGGAAA-     97
                     .|||||.|||.|||||....|.|||||  .|.||.||.||      ||| 
BPUM_2295___y     51 ACCTTATGATGAATGGGTTCAGTGGATCCAGCAGAATGTC------AAAC     94

BSNT_03813___     98 --AAGGCCG-TATTCTCGAT-CTGGCATGCGGCACGGGGGAAATCTCCAT    143
                       ||.||.| ||||.|.||| .|||| ||.||.||.||.||.||.||..|
BPUM_2295___y     95 CGAATGCTGCTATTATTGATGTTGGC-TGTGGAACTGGAGAGATTTCTCT    143

BSNT_03813___    144 CCGGCTTGCCGAAAAAGGCTTCGAGGTTACAGGCATCGATCTCAGCGAAG    193
                     .|||.|.||.||||||||...||..||.|||||.||.||.|||||.||||
BPUM_2295___y    144 TCGGTTAGCTGAAAAAGGTCACGCAGTCACAGGAATTGACCTCAGTGAAG    193

BSNT_03813___    194 AGATGCTTTCTTTCGCCCAGCAAAAGGTA---TCGAGTAGCCAGCCTATT    240
                     |.|||||..|||||||.||||||||.|.|   .|||..|..|||.|.|||
BPUM_2295___y    194 AAATGCTGGCTTTCGCGCAGCAAAAAGCACAGGCGAAAAAGCAGTCCATT    243

BSNT_03813___    241 TTATTTCTTCAGCAGGATATGAGAGAGATTACCGGCTTTGATG---GTCA    287
                     ..||||.|.||.||.||||||||||||.|.||.||.||||| |   ||| 
BPUM_2295___y    244 CAATTTTTACATCAAGATATGAGAGAGCTGACGGGTTTTGA-GCAAGTC-    291

BSNT_03813___    288 GTTTGACGCTGTTGTGATATGCTGTGACTCATTAAATTATTTAAAAACAA    337
                      |||.|.||.|..||.|||||||||||.||.||.|||||.|||||||...
BPUM_2295___y    292 -TTTCAAGCAGCGGTTATATGCTGTGATTCCTTGAATTACTTAAAAAACG    340

BSNT_03813___    338 AAAATGATGTGATCGAAACCTTTAACAGTGTTTTTCGGGTATTAAAGTCT    387
                     |||||||.||.|...||||||||||.|...|.||||||.|.|||.||.|.
BPUM_2295___y    341 AAAATGACGTCAAAAAAACCTTTAAAAACATGTTTCGGCTTTTAGAGGCA    390

BSNT_03813___    388 GAAGGCATACTGCTGTTTGATGTTCATTCATCTTTTAAAATTGCGGAAG-    436
                     ||.|||.|..|.||.||||||||||||.|..|||.||||||   ||||| 
BPUM_2295___y    391 GATGGCGTTTTACTCTTTGATGTTCATACTCCTTATAAAAT---GGAAGA    437

BSNT_03813___    437 --TCTTTCC-GGATAGCACATTTGCTGACCAGGACGAAGATATCAGCTAT    483
                       |.||.|| ||.|.| ||.|.|||.||.||.|..|||||.|||||||||
BPUM_2295___y    438 GATATTCCCAGGTTCG-ACTTATGCCGATCAAGGTGAAGAGATCAGCTAT    486

BSNT_03813___    484 ATTTGGCAGAGCTTTG-----CCGGAAGTGACGAGCTTTCTGTCATTCAT    528
                     |||||||||||   ||     ..|||  ||||..|..|||.||||||||.
BPUM_2295___y    487 ATTTGGCAGAG---TGATAAAGGGGA--TGACATGTATTCAGTCATTCAC    531

BSNT_03813___    529 GATATGTCGTTTTTTGTGTGGAACGGAGAAGCGTATGATCGTTTTGATGA    578
                     |||.|....||||||||...|.|||||||.|.||||.|.||||.||||||
BPUM_2295___y    532 GATTTAAGCTTTTTTGTAAAGGACGGAGATGTGTATCAGCGTTATGATGA    581

BSNT_03813___    579 GACACACGAGCAAAGAACGTTCCCGGTGGAAGAATACGAAGAAATGCTTA    628
                     ||||||.||.||..|.||.||.||                   ||  ||.
BPUM_2295___y    582 GACACATGAACAGCGTACATTTCC-------------------AT--TTG    610

BSNT_03813___    629 AGAAC--TGCGGCTTTCAGCT------CCATCGC---------------G    655
                     |||.|  ||||||.|||  ||      |..|.||               |
BPUM_2295___y    611 AGACCTATGCGGCGTTC--CTTGTGTCCGCTGGCTTTGAACAAATAGAAG    658

BSNT_03813___    656 TGACAGCTGATTTTACGGAT------ACCGAGCCATCAGCACAATCAGAA    699
                     ||||.|||||||||||..||      .|||.|..||..||..||  ||| 
BPUM_2295___y    659 TGACCGCTGATTTTACAAATGAAGCGCCCGGGGAATTCGCCGAA--AGA-    705

BSNT_03813___    700 CGCCTCTT---TTTCAAGGCGCAGAAATCAAAAACCATCGTTTCCTAA    744
                         |.||   |||||  ||..|||||.||||||||||||||   |||
BPUM_2295___y    706 ----TATTTCATTTCA--GCTAAGAAACCAAAAACCATCGTT---TAA    744


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