Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03979 and BPUM_2381
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:28
# Commandline: needle
# -asequence dna-align/BSNT_03979.1.24716.seq
# -bsequence dna-align/BPUM_2381___yrrI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03979-BPUM_2381___yrrI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03979-BPUM_2381___yrrI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03979
# 2: BPUM_2381___yrrI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1107
# Identity: 586/1107 (52.9%)
# Similarity: 586/1107 (52.9%)
# Gaps: 309/1107 (27.9%)
# Score: 1707.5
#
#
#=======================================
BSNT_03979 0 -------------------------------------------------- 0
BPUM_2381___y 1 GTGAAGAAACGTCCGATCCAATTTCTGATATATGCCGCAGGGGTCCTGCT 50
BSNT_03979 0 -------------------------------------------------- 0
BPUM_2381___y 51 TGTCCTTGCATCTTTGCTCATTTTATTGCAGCTCGACGAGTTATGGATGC 100
BSNT_03979 0 -------------------------------------------------- 0
BPUM_2381___y 101 CTATTTTTTTGTTGTTAAAGGCGGTTCTCATTCCGCTACTCATTGCTATT 150
BSNT_03979 0 -------------------------------------------------- 0
BPUM_2381___y 151 TTTATTTCTTATCTGCTTTATCCGATAGTGGAAAGATTGCATGCAGGGGG 200
BSNT_03979 1 -------------------------TTGGTCATTTATGTTCTTTTTTTTG 25
||| ||||||||.||.|||||||
BPUM_2381___y 201 CTTACCAAGGACTGTGAGTCTCTTATTG---ATTTATGTCCTGTTTTTTG 247
BSNT_03979 26 GCGGGATT-GGCTGGGCGTTGTATAAAGGGGTGCCTGTTTTAATCGTGCA 74
|||||||| |||| .|||.|.||||||||||.||||||..|.|||..|||
BPUM_2381___y 248 GCGGGATTGGGCT-TGCGGTTTATAAAGGGGCGCCTGTCATGATCAAGCA 296
BSNT_03979 75 GCTGACGGATTTGTCAGAAAATATACCCATGTTTGCCGAAACGTATAACG 124
|||.|..||..||||||||.|.||.||..||.||||.|||||||||||.|
BPUM_2381___y 297 GCTAAATGAGCTGTCAGAACAAATTCCTGTGCTTGCGGAAACGTATAATG 346
BSNT_03979 125 G-GCTTCTTCT-TCATGTGCATAACCATACGGATG--ACTGGCCTGATGG 170
| || |||.| .|||.|.|||.|.||||| |.| |.||||||||.||
BPUM_2381___y 347 GCGC--CTTATCACATATTCATCATCATAC--AAGCCATTGGCCTGACGG 392
BSNT_03979 171 TATGCATCACC----GTATAGATAAAATGATCCGCCAGACGGAGACGTTT 216
..|.||..||| |.||.|.|.||.||.| ||..||||||| .
BPUM_2381___y 393 ACTTCACGACCGCTTGGATCGCTTAATTGTT----CAATCGGAGAC---A 435
BSNT_03979 217 TTTGC-GGGAACGATCGAGGGTGCGATCAGCGG--GAT------CCGCAA 257
|.||| |..|||| |||...||||| ||| |.|.||
BPUM_2381___y 436 TATGCAGCTAACG---------GCGCGGAGCGGATGATTCTTAGCTGTAA 476
BSNT_03979 258 TG---TGCTTGATTACTTC-TTAATTGCTGCAACAATCCCTTTTCTCGTG 303
.| |.|||||||| |.| .||.||||.||....|||||||||||.||.
BPUM_2381___y 477 AGTCTTACTTGATTA-TGCACTAGTTGCAGCGCTCATCCCTTTTCTTGTT 525
BSNT_03979 304 TTTTATATGGTGAAGGACATTGAAT-TAATGAAAAAGACAGTATGGTACT 352
|||||||||||||||||.| ||||| .||||||...|.|.|.||||||.|
BPUM_2381___y 526 TTTTATATGGTGAAGGATA-TGAATACAATGAAGCGGGCCGCATGGTATT 574
BSNT_03979 353 TGACTCCGAAGTCGT---GGAGAAAGCGGGGCA-GCGCCTTTTTGCGGGA 398
||||.|||...||.| ||| |.|| |||||| ||| |||.|...||.
BPUM_2381___y 575 TGACGCCGCCCTCATTTCGGA-AGAG-GGGGCATGCG--TTTGTAAAGGC 620
BSNT_03979 399 TGTGGATGATTCGCTTGGCGATTATATCCGCGGCCAGCTTTTGGTCTGCT 448
.||.|||||.||.|||||..|||||||..|.||.|||||..|.||||| |
BPUM_2381___y 621 AGTTGATGAATCACTTGGTAATTATATTAGAGGGCAGCTGCTTGTCTG-T 669
BSNT_03979 449 TGATTC-TTGGCGTGATTGCAG---GCATTTCGTTCTGGGTATTTGGGCT 494
|.|||| ||||.|.| |||| .||||..|.|||||.|.|||....|
BPUM_2381___y 670 TCATTCATTGGGGGG---GCAGCCACCATTGTGCTCTGGCTGTTTCATAT 716
BSNT_03979 495 TCCGTATCCACTGATACTTGG---CCTTATCTCTGGAGTAACGAATGTCA 541
||||||.||.||..|.||||| .||.|| |||.|.|||||||||||
BPUM_2381___y 717 TCCGTACCCGCTTGTCCTTGGTATGCTGAT---TGGCGCAACGAATGTCA 763
BSNT_03979 542 TCCCGTATTTTGGCCCTTTCATCGGAGCTGTTCCTGCGTTGTTAATTGCG 591
|.|||||||||||.||..|.||.||.||..||||.||..|.||.||||||
BPUM_2381___y 764 TTCCGTATTTTGGACCGATTATTGGCGCGATTCCCGCTGTCTTTATTGCG 813
BSNT_03979 592 ATGACGATCTCAGTGAAGGCGGTTCTTGTTGTGGTGATTACGGT----GT 637
.|.||.|||||.|||||..|.|||.||.|||||.|||||||.|| |
BPUM_2381___y 814 TTTACCATCTCGGTGAAATCAGTTATTATTGTGCTGATTACAGTCGCCG- 862
BSNT_03979 638 TTATTCTGCAGTTTATGGAAGGAAATATCCTCAGTCCGTTCATTGTCGGC 687
|.|||||.|||.|.|||.|.||..||||.||.|||.|.||.||.||.
BPUM_2381___y 863 ---TACTGCAATTTTTAGAAAGCAACGTCCTTAGCCCGATTATCGTAGGG 909
BSNT_03979 688 AGAAGCCTTAAAATGCATCCGGTCGTTATCATGCTTGCACTCCTTGCCGG 737
|||||.|||.|.||||||||.|||||.||.|||||||...|.|||||.||
BPUM_2381___y 910 AGAAGTCTTCATATGCATCCTGTCGTCATTATGCTTGTCTTGCTTGCTGG 959
BSNT_03979 738 AGGGGAGCTTGCGGGAATCGTCGGGATGATTCTGGCTGTTCCTGCGACGG 787
.||.|||.|....||..|..|.||.||||||.|.||.||.||..|..|.|
BPUM_2381___y 960 TGGAGAGTTATTTGGTTTAATAGGCATGATTTTAGCCGTACCAACTGCCG 1009
BSNT_03979 788 CTGTTTTAAAAGTAATGATGATCCATTTTTTGCGGATGAGGACGGAG--- 834
||.|..|.|..||.||.||..|.||.|.|.|.|.||||||| ||.||
BPUM_2381___y 1010 CTATCATCAGGGTGATCATTGTGCAATATATCCTGATGAGG-CGAAGCGT 1058
BSNT_03979 835 -CATTGA 840
||||||
BPUM_2381___y 1059 TCATTGA 1065
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