Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03988 and BPUM_2388
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:28
# Commandline: needle
# -asequence dna-align/BSNT_03988.1.24716.seq
# -bsequence dna-align/BPUM_2388___yrrD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03988-BPUM_2388___yrrD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03988-BPUM_2388___yrrD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03988
# 2: BPUM_2388___yrrD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 615
# Identity: 286/615 (46.5%)
# Similarity: 286/615 (46.5%)
# Gaps: 246/615 (40.0%)
# Score: 655.0
#
#
#=======================================
BSNT_03988 0 -------------------------------------------------- 0
BPUM_2388___y 1 ATGAGTCTTGAAGCAAACGCACACGATAAGACTGTTCCGCAAAAGGTGGT 50
BSNT_03988 1 ----------TTGAGAACATGCCATGAAGTAGAAGGATTCCCA--GTATA 38
|||||||||||.|..||..|.||||||.|..|| .||||
BPUM_2388___y 51 TGAGCACATTTTGAGAACATGTCGAGAGCTTGAAGGAATGTCAATCTATA 100
BSNT_03988 39 CTCAGAACG----AACTTCTTGTTATCTCGGGGCAATTTCC------GAT 78
|| | |||.|||..||..||.|| |||| |||
BPUM_2388___y 101 CT------GGTGAAACGTCTCATTCACTTGG------TTCCATAAAAGAT 138
BSNT_03988 79 ATTTG-TTTTTCTCTGAA-----------AGGAGATTGTCT----TGGGT 112
||||| ||.||..|.|.| ||||.| |||.| ||||.
BPUM_2388___y 139 ATTTGCTTATTAGCCGGAGGCAGCTGCGGAGGATA-TGTATTAGATGGGA 187
BSNT_03988 113 TTATTCTTGCACAAAAACGCTTTTTGCATCATCAT--CATACGCTATTAC 160
..| |.|||.|| |.||| |.|||| |||.|.|
BPUM_2388___y 188 AAA-------AGAAAGAC----TGTGC--CTTCATTCCATTCTC------ 218
BSNT_03988 161 GGGCGTGTGATATCTCTTCCATTCTTGATGAC-------CGCATA-TTG- 201
|||..|.||| || |.|||| .||||| |||
BPUM_2388___y 219 -GGCTGGGGAT--------CA-----GCTGACAGACAAAGGCATACTTGT 254
BSNT_03988 202 --GCTTC------GGTCAGTTCAGAACAGCTT---TTGCCTC-------- 232
|||.| || ||| || ||.| || ||||
BPUM_2388___y 255 GAGCTGCCAAGAGGG--AGT--AG----GCATGGATT-CCTCCGCCCCAT 295
BSNT_03988 233 ---------TTCCGAAATCATGCTTCACATACGAGCAGATGAAGATGAAG 273
||.||||||.| .|.|.|||.||||
BPUM_2388___y 296 CCCTCTTATTTTCGAAATTA---------------AAAAAGAAAATGA-- 328
BSNT_03988 274 CTTGTGAAATCGCAAGAGGGCGATATATTGGGGATGCTGGAAGATGTATA 323
||.|.||||..||.||.||.|..||.||.||..|||||||||||||
BPUM_2388___y 329 ----TGCAGTCGCCTGACGGTGAAAATTTAGGCATTTTGGAAGATGTATA 374
BSNT_03988 324 CTTTTGTTTGGACA----GGGGCATAATCGTAGCATATGAACTCTCGGAC 369
|| ||||.||| .|||||.|||||||||||||||||||||||||
BPUM_2388___y 375 CT----TTTGCACAAATTCGGGCACAATCGTAGCATATGAACTCTCGGAC 420
BSNT_03988 370 GGTTTCTTTTCTGACCTGGCGGGAAGCAAGCGCCAGATCC--AAAGAGC- 416
||.||||||.|.||.||..|.|| |||.| |||.|||
BPUM_2388___y 421 GGCTTCTTTACAGAGCTATCAGG------------GATTCGAAAACAGCT 458
BSNT_03988 417 ---GGATTC-----GCTTG-TCGAGGTGC----GGAAAGACGAGATCGTT 453
||.|.| .|||| ||.|.||.| ||||..|| |.|||
BPUM_2388___y 459 TCAGGCTGCCGGAACCTTGATCAACGTTCAAAAGGAAGCAC----TTGTT 504
BSNT_03988 454 CTGAACGGATAG--- 465
||.|||.||..|
BPUM_2388___y 505 CTAAACCGAACGTAA 519
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