Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03999 and BPUM_2396

See Amino acid alignment / Visit BSNT_03999 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:30
# Commandline: needle
#    -asequence dna-align/BSNT_03999___aspS.1.24716.seq
#    -bsequence dna-align/BPUM_2396___aspS.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03999___aspS-BPUM_2396___aspS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03999___aspS-BPUM_2396___aspS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03999___aspS
# 2: BPUM_2396___aspS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1854
# Identity:    1340/1854 (72.3%)
# Similarity:  1340/1854 (72.3%)
# Gaps:         144/1854 ( 7.8%)
# Score: 4733.0
# 
#
#=======================================

BSNT_03999___      1 ------TTGTTTGGAAGAACATATTATTGCGGTGATATAACTGAAAAAGC     44
                           .|||||||.|||||.|.||||||.||.||..||||.|||.|...
BPUM_2396___a      1 ATGTTTGTGTTTGGTAGAACTTTTTATTGTGGAGAAGTAACAGAAGACCA     50

BSNT_03999___     45 AATTGGCGAATC---TGTAACGCTGAAAGGCTGGGTCCAAAAAAGACGAG     91
                     |||.||..||.|   ||||   .|.|||||.|||||.|||||||||||.|
BPUM_2396___a     51 AATCGGTCAAACCGTTGTA---TTAAAAGGATGGGTTCAAAAAAGACGTG     97

BSNT_03999___     92 ACCTCGGCGGATTGATTTTTATTGACTTGCGTGACCGTACGGGAATTGTT    141
                     ||||.||||||||.||.|||||.||..|||||||||||||.||||||||.
BPUM_2396___a     98 ACCTTGGCGGATTAATCTTTATCGATCTGCGTGACCGTACAGGAATTGTA    147

BSNT_03999___    142 CAAGTCGTTTTCAACCCCGATGTGTCAAAAGAAGCGCTTGCTGTTGCGGA    191
                     ||||..||||||||.||.||..|.||||||||.|||||||          
BPUM_2396___a    148 CAAGCGGTTTTCAATCCAGACCTTTCAAAAGAGGCGCTTG----------    187

BSNT_03999___    192 AGGCATCAGA----------AATGAATACGTGCTTGATGTTCAAGGAAAA    231
                     ||.||.||||          ||||||||.||.||||||.||.||||||..
BPUM_2396___a    188 AGACAGCAGAATCGATTCGTAATGAATATGTCCTTGATATTAAAGGAACG    237

BSNT_03999___    232 GTAGTGGCGCGGGAAGAAGGAACAGTCAATCCGAATTTGAAGACAGGTGC    281
                     ||.|||||..|.|||||||.||||.|||||||.|||.|.||.|||||...
BPUM_2396___a    238 GTTGTGGCAAGAGAAGAAGCAACAATCAATCCAAATCTAAAAACAGGGAA    287

BSNT_03999___    282 GATCGAAATTCA---CGCTAACGGAGTGACAGTACTAAGTGCTGCAAAGA    328
                     .||.|||||.||   || .||||  ||.|..||..|||.||..||.||.|
BPUM_2396___a    288 AATTGAAATACAAGTCG-AAACG--GTCAGCGTGTTAAATGAAGCGAAAA    334

BSNT_03999___    329 CGCCTCCATTTGCGATTTCTGATCAAGCAGAAGAAGTGTCAGAGGACGTT    378
                     |.|||||.||||.||||||.||||||||.||.||.||.|||||.||.||.
BPUM_2396___a    335 CTCCTCCTTTTGTGATTTCAGATCAAGCGGATGAGGTATCAGAAGATGTG    384

BSNT_03999___    379 CGTTTAAAACACCGTTACTTAGATTTGCGCAGACCGGCTATGTTTCAAAC    428
                     ||..|.|||.|||||||||||||..|.|||.|.||.|||||||||.||||
BPUM_2396___a    385 CGCCTTAAATACCGTTACTTAGACCTTCGCCGTCCTGCTATGTTTGAAAC    434

BSNT_03999___    429 GATGCAGATGCGTCATAATGTGACGAAAGCTGTCCG-CAGCTTTT--TAG    475
                     ||||.|.|||||.|||.|.||.||||.|||..|||| ||   |||  |||
BPUM_2396___a    435 GATGAAAATGCGACATGAAGTCACGAGAGCATTCCGACA---TTTCCTAG    481

BSNT_03999___    476 ATGAAAACGGGTTTCTTGATATTGAAACGCCGATTTTAACAAAAAGCACG    525
                     ||||.|||||.||.||.|||||||||||.|||||.|||||||||||.|||
BPUM_2396___a    482 ATGATAACGGCTTCCTAGATATTGAAACACCGATCTTAACAAAAAGTACG    531

BSNT_03999___    526 CCTGAAGGCGCACGTGACTA-CTTGGTGCCGAGCCGTGTGCACGAAGGTG    574
                     ||.||.||.||||||||||| ||| ||.||.||||||||.||.|||||.|
BPUM_2396___a    532 CCAGAGGGTGCACGTGACTATCTT-GTTCCAAGCCGTGTACATGAAGGAG    580

BSNT_03999___    575 AGTTCTACGCGCTGCCGCAGTCTCCGCAGCTATTTAAACAGCTTCTGATG    624
                     |.|||||.||..||||.|||||.|||||..||||||||||..|.||.|||
BPUM_2396___a    581 AATTCTATGCCTTGCCTCAGTCCCCGCAATTATTTAAACAATTGCTAATG    630

BSNT_03999___    625 GTATCAGGCATTGAACGGTATTATCAGATTGCCCGCTGTTTCCGTGATGA    674
                     ||.|||||.||.||.||.||.|||||.|||||||||||.||..|.|||||
BPUM_2396___a    631 GTCTCAGGTATGGATCGTTACTATCAAATTGCCCGCTGCTTTAGAGATGA    680

BSNT_03999___    675 AGACTTGCGTGCGGACCGCCAGCCTGAGTTCACGCAAATTGATATTGAAA    724
                     ||||||.|||||.|||||.|||||.||.|||||.|||.|.|||||.||||
BPUM_2396___a    681 AGACTTACGTGCTGACCGTCAGCCGGAATTCACACAAGTCGATATCGAAA    730

BSNT_03999___    725 TGTCCTTTATGAGCCAGGAAGACATTATGTCATTGGCTGAGGATATGATG    774
                     |||||||||||||.||.||.|||||||||.|..|.|||||.||.||||||
BPUM_2396___a    731 TGTCCTTTATGAGTCAAGAGGACATTATGACGCTTGCTGAAGAGATGATG    780

BSNT_03999___    775 GCAAAGATTATGCGTGAAACA----AAAGGCGTGGA-----------AAT    809
                     ||||||.|.|    |||||.|    ||||||||.||           .||
BPUM_2396___a    781 GCAAAGGTGA----TGAAAGACGTCAAAGGCGTAGATCTGACATTGCCAT    826

BSNT_03999___    810 TAAGCTTCCTCTTCCCAGAATGACGTATGACGAAGCAATGAACAAGTACG    859
                     ||     ||||      |.|||||.|||||.|||||.|||||....||.|
BPUM_2396___a    827 TA-----CCTC------GTATGACATATGATGAAGCGATGAATTCTTATG    865

BSNT_03999___    860 GTTCTGATAAACCGGATACGCGTTTTGACAT---GCTT-TTGACAGATGT    905
                     |.|||||||||||.|||||.||||||||.||   |||| |..|||    |
BPUM_2396___a    866 GGTCTGATAAACCAGATACACGTTTTGAGATGAAGCTTGTCAACA----T    911

BSNT_03999___    906 GTCTGACATTGTGAAGGATACGGAATTTAAAGTATTCTCATC--AGCTGT    953
                     .||.||||..||.||.||..|.||.||.||||  ||.|.|.|  ||||||
BPUM_2396___a    912 TTCAGACACGGTAAAAGACTCTGACTTCAAAG--TTTTTAGCGGAGCTGT    959

BSNT_03999___    954 AGCAAACGGCGGTGTGGTCAAAGCCATCAACGTAAAAGGCGGTGCCGGCG   1003
                     ...|||.||.||.|..||.|||||||||||.||.|||||.|..| |.|||
BPUM_2396___a    960 GAAAAATGGTGGAGCTGTGAAAGCCATCAATGTCAAAGGAGCAG-CAGCG   1008

BSNT_03999___   1004 -ATTACTCCAGAAAAGACATCGATGCTCTTGGCGCTTTTGCTGCAAACTA   1052
                      |.|||||.|||||||||||.|||||.|||||.||.|||||.||.|||||
BPUM_2396___a   1009 AACTACTCAAGAAAAGACATTGATGCCCTTGGTGCATTTGCAGCGAACTA   1058

BSNT_03999___   1053 TGGGGCGAAAGGACTTGCCTGGGTGAAAGTTGAAG---CAGACGGAGTGA   1099
                     .||.||.|||||.||.||.|||.|.||||..||||   ||||   |.|.|
BPUM_2396___a   1059 CGGTGCAAAAGGTCTAGCTTGGCTTAAAGCAGAAGGGTCAGA---ATTAA   1105

BSNT_03999___   1100 AAGGACCGATCGCTAAATTCTTTGATGAAGAAAAGCAGTCTAAGCTG-AT   1148
                     |||||||.||.||||||||||||||.||||.|||||     |||..| ||
BPUM_2396___a   1106 AAGGACCAATTGCTAAATTCTTTGACGAAGCAAAGC-----AAGGAGAAT   1150

BSNT_03999___   1149 TGAAGCACTTGATGCTGC-------TGAAGGTGATTTGTTGCTGTTCGGA   1191
                     |.||..|   ||.|||||       .|||||.||..|.||.||.||.|..
BPUM_2396___a   1151 TAAAAGA---GAAGCTGCAAGTCGAAGAAGGCGACCTTTTACTTTTTGTT   1197

BSNT_03999___   1192 GCGGATCAATTTGAAGT-TGTGGCCGCAT----CACTCGGCGCGCTGCGT   1236
                     ||.|||.|    ||.|| |||.|.| |||    ||||.|||||.||.|||
BPUM_2396___a   1198 GCAGATAA----GACGTCTGTTGTC-CATGATGCACTTGGCGCCCTTCGT   1242

BSNT_03999___   1237 TTAAAGCTTGGGAAAGAGCGCGGGCTGATTGA-------CGAAAACCTGT   1279
                     .||||.||.||.|||||||..|..||.||.||       |||       |
BPUM_2396___a   1243 CTAAAACTCGGCAAAGAGCTTGAACTCATCGATGAGTCTCGA-------T   1285

BSNT_03999___   1280 TCAATTTCTTATGGGTCATTGACTGGCCGCTATTAGAGCATGATCCTGAG   1329
                     ||||.|||||||||||..||||.||||||||..|.||..|.|||...||.
BPUM_2396___a   1286 TCAACTTCTTATGGGTTGTTGATTGGCCGCTGCTTGAAAAAGATGAAGAA   1335

BSNT_03999___   1330 GAAGGCCGTTTCTACGCAGCGCACCATCCGTTCACAATGCCTGTCCGGGA   1379
                     ||||||||||||||.||.||.||.|||||.|||||||||||.||.||.||
BPUM_2396___a   1336 GAAGGCCGTTTCTATGCTGCCCATCATCCATTCACAATGCCAGTACGCGA   1385

BSNT_03999___   1380 AGACCTTGAGCTGATTGAAAC-AGCGCCTGAAGACATGAAAGCACAAGCT   1428
                     .||.|||||..|.|||||.|| ||| ||.|||||||||||.|||||.|||
BPUM_2396___a   1386 CGATCTTGAATTAATTGAGACAAGC-CCAGAAGACATGAAGGCACAGGCT   1434

BSNT_03999___   1429 TATGACCTCGTCTTAAACGGCTATGAGCTTGGCGGCGGTTCAATCCGTAT   1478
                     ||.||.||.|||.|.||.|||||||||||||||||.|||||.||.|||||
BPUM_2396___a   1435 TACGATCTTGTCCTGAATGGCTATGAGCTTGGCGGAGGTTCGATTCGTAT   1484

BSNT_03999___   1479 TTTCGAAAAGGATATTCAGGAAAAAATGTTTGCGCTT-CTCGGCTTCTCA   1527
                     ||||||||||||.|||||.|||||||||||| .|||| ||.||.||.|||
BPUM_2396___a   1485 TTTCGAAAAGGACATTCAAGAAAAAATGTTT-AGCTTACTTGGGTTTTCA   1533

BSNT_03999___   1528 CCAGAAGAAGCGGCTGAACAGTTCGGATTCCTGCTGGAAGCATTTGAATA   1577
                     ..||||||.||...||||||.||.||.|||||.||.||.||.|||||..|
BPUM_2396___a   1534 AAAGAAGAGGCTTATGAACAATTTGGCTTCCTTCTAGATGCTTTTGAGCA   1583

BSNT_03999___   1578 CGGCGCTCCTCCGCACGGCGGAATCGCACTTGG-CTTAGACCGTCTCGTT   1626
                     |||.|.|||.||||||||||||||||||||||| ||| |||||..|.||.
BPUM_2396___a   1584 CGGTGTTCCCCCGCACGGCGGAATCGCACTTGGTCTT-GACCGATTAGTG   1632

BSNT_03999___   1627 ATGCTTCTCGCAGGACGTACGAACCTGAGAGATACGATTGCATTCCCGAA   1676
                     |||||.||.||.||.||..|.|||||.|||||.||||||||.||||||||
BPUM_2396___a   1633 ATGCTGCTTGCTGGGCGCTCTAACCTAAGAGACACGATTGCTTTCCCGAA   1682

BSNT_03999___   1677 AACGGCAAGTGCAAGCTGCCTGATGACAGAGGCGCCTGGAGAAGTAAGCG   1726
                     ||||||||||||.||||||.||.|.|||||.||.|||||..|.||.||||
BPUM_2396___a   1683 AACGGCAAGTGCGAGCTGCGTGCTAACAGATGCTCCTGGCCATGTGAGCG   1732

BSNT_03999___   1727 ACGCTCAGCTTGACGAGCTTCATCTT-TCTATCAAGAAAAAAGTTAAGAA   1775
                     |.||.||||||||.||| ||.|.||| .|.||.||.|.||||||.||..|
BPUM_2396___a   1733 AGGCGCAGCTTGATGAG-TTAAGCTTAGCCATTAAAACAAAAGTAAAACA   1781

BSNT_03999___   1776 CTGA   1779
                     .|.|
BPUM_2396___a   1782 GTAA   1785


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