Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04007 and BPUM_2403
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:31
# Commandline: needle
# -asequence dna-align/BSNT_04007___yrvE.1.24716.seq
# -bsequence dna-align/BPUM_2403___recJ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04007___yrvE-BPUM_2403___recJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04007___yrvE-BPUM_2403___recJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04007___yrvE
# 2: BPUM_2403___recJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2515
# Identity: 1637/2515 (65.1%)
# Similarity: 1637/2515 (65.1%)
# Gaps: 344/2515 (13.7%)
# Score: 4917.5
#
#
#=======================================
BSNT_04007___ 1 ATGTTAGCGTCAAAAATGCGATGGGAA-------ATCC-AGCGACCAGAT 42
||||||...||.||||||||.|||||| |||| ||||
BPUM_2403___r 1 ATGTTATTATCCAAAATGCGCTGGGAATATGAACATCCAAGCG------- 43
BSNT_04007___ 43 CAGGATAAGGTCAAATCACTCACAGAACAAT-TGCATATAACACCTCTTG 91
|.||.||.||.|||||||||.|.||| ||| ||.||||..||.|.||..
BPUM_2403___r 44 -AAGAAAAAGTGAAATCACTCTCTGAA-AATCTGAATATTTCAGCGCTGA 91
BSNT_04007___ 92 TTGCGTCCCTGCTTGTAAAAAGAGGCTTTGATACGGCAGA--AAGCGCTA 139
.|||.||.||.||||||||||||||..|.||....|.||| ||||| |
BPUM_2403___r 92 CTGCATCGCTTCTTGTAAAAAGAGGACTCGAAGAAGTAGAAGAAGCG--A 139
BSNT_04007___ 140 GG-CTGTTTTTA---CATACAAAGGATGCCGATTTTTATGATCCTTTTGA 185
|| || |||||| .|| |||| |.|||||.||..|||||||.|||..
BPUM_2403___r 140 GGTCT-TTTTTATTTGAT-CAAA--AAGCCGAATTCCATGATCCATTTCT 185
BSNT_04007___ 186 AATGAAAGGCATGAAAGAAGCGGCAGATCGAATAAAACAGGCGATTTCAC 235
|.|.|||||.|||||||||||.|.|||.||.||.||..|.|||||...|.
BPUM_2403___r 186 ATTAAAAGGAATGAAAGAAGCAGTAGAGCGCATCAACAAAGCGATCGAAG 235
BSNT_04007___ 236 AACAAGAAAAGATTATGATATATGGCGATTATGACGCCGATGGGGTTACA 285
|.||.|||..||||.||||.|..||.||.|||||.||.|||||.||.|||
BPUM_2403___r 236 AGCAGGAATCGATTGTGATCTTCGGAGACTATGATGCGGATGGTGTGACA 285
BSNT_04007___ 286 AGTACGTCAGTAATGCTT---CACACGCTGCAAAAACTGTCGGCTCAAGT 332
||||||||.| ||||| ||.||..|..||.|..||||.||..||||
BPUM_2403___r 286 AGTACGTCTG---TGCTTTTACATACATTAAAAGAGTTGTCTGCGAAAGT 332
BSNT_04007___ 333 TGATTTTTATATACCTGACCGTTTTAAAGAAGGATATGGACCTAATGAAC 382
.||.||||||||.||.||.||.|||||||||||.||.||.||||||||||
BPUM_2403___r 333 AGACTTTTATATTCCAGATCGATTTAAAGAAGGCTACGGGCCTAATGAAC 382
BSNT_04007___ 383 AGGCGTTTCGTTCGATTAAAGATC--GGGGCTTCTCTTTGATCATTACGG 430
||||.|||||.|..||.|||||.| ||.||.||.||| .||||.||||
BPUM_2403___r 383 AGGCTTTTCGATATATCAAAGAGCAAGGCGCATCGCTT--GTCATCACGG 430
BSNT_04007___ 431 TTGATACAGGAATTGCCGCTGTGCATGAAGCGAAGG--TGGCAAAGGAAC 478
|.||||||||.|||||.|||||..||||||| |.| |.|||||.|||.
BPUM_2403___r 431 TCGATACAGGCATTGCAGCTGTAAATGAAGC--ACGTATTGCAAAAGAAA 478
BSNT_04007___ 479 TCGGACTGGATGTCATCATTACTGATCATCATGAACC--GGGACCGGAGC 526
|.|||.|.||..|.||||||||.|||||.|||||||| |.|| |||||
BPUM_2403___r 479 TAGGATTAGACCTGATCATTACAGATCACCATGAACCAAGTGA--GGAGC 526
BSNT_04007___ 527 TTCCGGATGTCCATGCGATCGTCCACCCGAAGCAGCCTGGCTGCACTTAC 576
|.||.||.|..|.||||||.|||||.||.||||||||.||.||....||.
BPUM_2403___r 527 TGCCTGAGGCACTTGCGATTGTCCATCCTAAGCAGCCAGGTTGTGAGTAT 576
BSNT_04007___ 577 CCGTTTAAAGAGCTTGCCGGGGTTGGAGTCGCGTTTAAGCTTGCCCACGC 626
||.||||||||.||||||||.||.||.||.||||||||..|.||.||.||
BPUM_2403___r 577 CCTTTTAAAGAACTTGCCGGTGTAGGTGTGGCGTTTAAAGTGGCGCATGC 626
BSNT_04007___ 627 -TTTATTGGGTGAA--CTTCCTGATGAACTGCTTGACCTGGCGGCTATCG 673
.||.||| ||| ||.||...|.|.|||.|.||.||.||.||.||.|
BPUM_2403___r 627 ACTTCTTG---GAAAGCTGCCAACTCAGCTGTTAGATCTTGCAGCAATTG 673
BSNT_04007___ 674 GCACCATTGCCGATCTAGTCCCGCTGCATGACGAAAACAGATTAATTGCA 723
|.||.|||||.|||||.||.||.||.|||||.|||||.||||...|.||.
BPUM_2403___r 674 GGACAATTGCGGATCTTGTGCCCCTTCATGATGAAAATAGATGGCTCGCT 723
BSNT_04007___ 724 ACACTAGGACTTGAAAG--GCTTCGACGGACAAATCGGCTCGGCTTAAAA 771
|.|..|||.||| |.| ||||||.|.|.|.|||.|||| |
BPUM_2403___r 724 AAAAAAGGGCTT--ATGCAGCTTCGGCAGTCGAATAGGCT---------A 762
BSNT_04007___ 772 GAGCTGATTAAGCTGTCAGGCG-------GAGACATCGG----------- 803
|.||||| ||||| .||| |.|||
BPUM_2403___r 763 GGGCTGA----------AGGCGTTATTGAAAGA-AGCGGGCGCTACTCTT 801
BSNT_04007___ 804 --AGAAGCGAACGAAGAAACAGTCGGATTTCAGCTCGCACCAAGGCTGAA 851
||||||.||.||.|||||.|||||.|||||..|.||.||||||||.||
BPUM_2403___r 802 GAAGAAGCAAATGAGGAAACGGTCGGCTTTCAAATTGCGCCAAGGCTAAA 851
BSNT_04007___ 852 TGCCGTCGGAAGAATCGAACAGGCGGATCCCGCTGTTCATTTGCTTATGT 901
|||.||.|||.||||.||||||||.|||||.|||||.|||.|.||.|||.
BPUM_2403___r 852 TGCTGTTGGACGAATTGAACAGGCAGATCCAGCTGTCCATCTTCTCATGA 901
BSNT_04007___ 902 CAGAGGATTCGTTTGAAGCGGAAGAGCTTGC-CGCAGAAATTG-ACCAG- 948
||||.|||..|..|||.||.|||||.||.|| || ..||| ||.||
BPUM_2403___r 902 CAGAAGATAAGGATGAGGCAGAAGAACTCGCTCG----TTTTGTACAAGA 947
BSNT_04007___ 949 -CTGAACAAAGAGCGCCAAAAAATGGTCAGCAAAATGACGGATGAAGCGA 997
|||||.|||||.||.||||||||.||.||.|..||.||.||.|||||.|
BPUM_2403___r 948 ACTGAATAAAGAACGTCAAAAAATTGTGAGTACGATTACAGAAGAAGCCA 997
BSNT_04007___ 998 TTGAAATGGTTGAACAG-CAAGGGCTCGATCAAACTGCAATTGTCGTGGC 1046
||.|||||||.|||.|| ||.|.|.| ||.||..||||.|||||.||.||
BPUM_2403___r 998 TTCAAATGGTGGAAGAGACAGGTGAT-GACCAGTCTGCGATTGTTGTAGC 1046
BSNT_04007___ 1047 CAAAGCCGGATGGAACCCGGGAGTCGTCGGGATTGTGGCTTC-AAAGCTT 1095
.|||||.||.|||||.|||||.||.|||||.|||||.||||| ||| ||
BPUM_2403___r 1047 GAAAGCGGGCTGGAATCCGGGTGTTGTCGGAATTGTTGCTTCTAAA--TT 1094
BSNT_04007___ 1096 GTGG---ACCGCTTCTACCGACCGGCCATTGTTCTTGGCATTGATGAAGA 1142
|..| ||...|||| ||.|||||.|||||.|||||.||.|||||.||
BPUM_2403___r 1095 GACGGATACATTTTCT--CGTCCGGCGATTGTGCTTGGAATAGATGAGGA 1142
BSNT_04007___ 1143 AAAGGGAATCGCTAAAGGTTCGGCCCGAAGCATCAGAGGCTTTAATTTAT 1192
.|.|..|||.||.|||||.||.||.||.||.||....|||||..||.|||
BPUM_2403___r 1143 GACGCAAATGGCAAAAGGATCAGCGCGGAGTATTCCTGGCTTCGATCTAT 1192
BSNT_04007___ 1193 TTGAGAGCC-TTTCTG--AATGCAGAGATATTCTTCCTCATTTCGGCGGC 1239
|| ..|| |||..| |||||.|.||.|||||.||.|||||||||||.
BPUM_2403___r 1193 TT---TTCCATTTAAGCAAATGCCGCGACATTCTGCCGCATTTCGGCGGG 1239
BSNT_04007___ 1240 CATCCAATGGCTGCGGGGATGACGCTGAAAGCTGAAGATGTGCCGGATTT 1289
||.||.|||||||||||.|||||.||...|||.||.|||||.|| |||
BPUM_2403___r 1240 CACCCGATGGCTGCGGGTATGACACTTCGAGCGGATGATGTACC---TTT 1286
BSNT_04007___ 1290 GCGAAGCAGGCTGAACGA-------AATA-GCGGACAATACGCTTACGGA 1331
.|.||| .|||.|| |||| |||.|..|.|||.|.||.||
BPUM_2403___r 1287 ACTAAG-----GGAAAGATTAAATCAATATGCGAATGAAACGTTGACAGA 1331
BSNT_04007___ 1332 AGAGGATTTTATTCCCGTACAGGAAGTCGA--CCTTGTCTGCAGCATCGA 1379
.||.|||||||||||..|.|||...||||| || ||.||.|...|.||
BPUM_2403___r 1332 GGAAGATTTTATTCCGATTCAGCGGGTCGATGCC--GTATGTAAAGTAGA 1379
BSNT_04007___ 1380 GGACATT-ACAGTTGAAAGC-ATCGCAGAAATGAACATGCTGTCTCCTTT 1427
.|| ||| ||.|||| |||| ||.|.|||||||...||||||||.||.||
BPUM_2403___r 1380 CGA-ATTGACGGTTG-AAGCGATTGAAGAAATGGGGATGCTGTCACCATT 1427
BSNT_04007___ 1428 TGGCATGCTTAACCCGAAACCGCACGTTCTCGTAGAAAACGC-AGTACTG 1476
||||||||..|||||.||.|||..|.||.|..|.|||.|.|| || |||.
BPUM_2403___r 1428 TGGCATGCAAAACCCAAAGCCGTTCATTATGATTGAAGATGCGAG-ACTT 1476
BSNT_04007___ 1477 GAAGATGTCCGCAAGATAGGGGCAAATAAAACTCATGTCAAAATGACGAT 1526
|||||..||||.|..||.||.||||||.|.|.||||.|.||||||.| |
BPUM_2403___r 1477 GAAGAAATCCGAACAATTGGAGCAAATCAGAATCATATTAAAATGTC--T 1524
BSNT_04007___ 1527 CAGAAACG---------AGTCGTCCCAGCTTGATTGCGTCGGTTTTAATA 1567
|.|||| | || |.||||||.||.|||||||||.||.
BPUM_2403___r 1525 CTGAAA-GATGAAGATAAG------CTGCTTGACTGTGTCGGTTTTCATC 1567
BSNT_04007___ 1568 AAGGCGAGCTTCAAGAAGGCATCGTACCGGGTTCAAGAATTTCCATTGTC 1617
||||..|..|..||||||...|.||..|.|||....|.||||||.|..|.
BPUM_2403___r 1568 AAGGTCAATTAAAAGAAGAAGTTGTCACAGGTAGCCGCATTTCCGTCATT 1617
BSNT_04007___ 1618 GGTGAGATGTCAATCAACGAATGGAACAATCGAAAAAAGCCGCAGCTTAT 1667
|||||.|||||.||.||.||||||||.||.||.||.||.||.|||||.||
BPUM_2403___r 1618 GGTGAAATGTCCATTAATGAATGGAATAACCGGAAGAAACCTCAGCTCAT 1667
BSNT_04007___ 1668 GATAAAGGATGCCGCTGTTTCTGAATGGCAGCTGTTTGATTTAAG-GGGA 1716
|.|.||.||||||...||...|||||||||.|||||||||||..| ||.|
BPUM_2403___r 1668 GCTGAAAGATGCCCGAGTAGATGAATGGCAACTGTTTGATTTGCGCGGCA 1717
BSNT_04007___ 1717 AAACGGACGTGGGAAGACACAGTTTCCGCCCTTCCATCT----GCTAAAC 1762
|||..|| .||||||.|.| |||||| |||..||
BPUM_2403___r 1718 AAAATGA-TTGGGAAAAAA--------------CCATCTTCACGCTTGAC 1752
BSNT_04007___ 1763 GGGCCA-------------TTGTCTCTTTCAAAGAAGACTCAACAACATT 1799
||| |.||||.|||..|.|||||..||| ||||..
BPUM_2403___r 1753 ---CCAGAAAAATATGTGGTGGTCTGTTTTGACGAAGATACAA-AACAGG 1798
BSNT_04007___ 1800 ACTTCAAACTGAAGACCT-TCGCCGAGAAGTGCACGTCATCA-GTTCTAA 1847
|..|||| | || |||| .|||||| ||||
BPUM_2403___r 1799 AAGTCAA----------TATC-CCGA---------TTCATCATGTTC--- 1825
BSNT_04007___ 1848 AGATCAAGCAAAGGCGTTTGACC--TCGATGGT-----GCA--TATATTG 1888
||..||.||| .||||.|.| ||||| || ||| |||.|.|
BPUM_2403___r 1826 --ATGCAGAAAA--TGTTTCAACATTCGAT-GTAGAAGGCAAGTATGTCG 1870
BSNT_04007___ 1889 TATTACTG--GATCCGCCG--CCTTC-GCTGGACA--TGCTCGCACGTTT 1931
|.|| || ||| | |||.| |.||.||| ||||
BPUM_2403___r 1871 TTTT--TGCAGAT-----GTACCTGCAGATGAACACTTGCT--------- 1904
BSNT_04007___ 1932 ACTGGAAGGCAAGGC----------------GCCTGAGCGGATATATTTT 1965
|||||| || ||| |||| |.|.|.|
BPUM_2403___r 1905 -----AAGGCA--GCTGTTAGAAAATCAAAAGCC--AGCG---AGAGTGT 1942
BSNT_04007___ 1966 AT----TTTTCTCAA--TCATGAGGACCACTTTTTATCAACTTTTC---- 2005
|| ||||| ||| ..|.||.||.||.||..|.||..||||.|
BPUM_2403___r 1943 ATACGGTTTTC-CAAAGAAAAGAAGATCATTTCATGTCCTCTTTCCCTAG 1991
BSNT_04007___ 2006 CCGCAAGAGACCACTTTAAATGGTATTATGCGTTCTTGCTGAAAAGAGGC 2055
|||| ||.||.||.|||||||..||||..||||||.|||||.||||.
BPUM_2403___r 1992 CCGC----GATCAATTCAAATGGTTGTATGGATTCTTGTTGAAACGAGGA 2037
BSNT_04007___ 2056 GCTTTTGACGTGAAAAAACACGGTTCAGAGCTTGCAAAACATAAAGGCTG 2105
..|||.....|.||..||||.||....||||||||.|||||||.||||||
BPUM_2403___r 2038 AGTTTCCCTCTCAAGGAACAAGGGATGGAGCTTGCGAAACATAGAGGCTG 2087
BSNT_04007___ 2106 GTCCGTTGAAACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTT 2155
|.|....||.|||||.|.|||.||||||||||||||||||||.|||||||
BPUM_2403___r 2088 GACAAAAGATACAATGATTTTTATGACAAAGGTGTTTTTTGAACTCGGTT 2137
BSNT_04007___ 2156 TTGTTAAAATAGAGAATGGTGTGCTGTCTGTTGTGAGCGGAGC----AAA 2201
||||||||||||||||||||||||||||..|.||..|.|..|| |||
BPUM_2403___r 2138 TTGTTAAAATAGAGAATGGTGTGCTGTCAATAGTACGTGATGCCCCTAAA 2187
BSNT_04007___ 2202 GAAACGCGACTTAACAGACTCACAAACATAT-CAGGCGAAACAGCAGCTG 2250
.|| ||.|||||.|..|||..|.|.||| || ||.|||||.|...||
BPUM_2403___r 2188 AAA----GATTTAACGGCATCAGCATCCTATACA-GCAAAACAACGATTG 2232
BSNT_04007___ 2251 ATGGAACTGGATCAAAAGCTGAATTATTCTTCTGCTGAAGAGCTGAAGGA 2300
||||||||.|||||||..||.|..|||||.||.||..|||||||||||||
BPUM_2403___r 2233 ATGGAACTCGATCAAACACTAACATATTCCTCAGCCAAAGAGCTGAAGGA 2282
BSNT_04007___ 2301 ATGGCTGAATAAGC-TGATGAAACAAGATTCA---GAGGCTTATGAAAGT 2346
|||||||||| ||| ||||||...|||..||| | .|||| |||
BPUM_2403___r 2283 ATGGCTGAAT-AGCATGATGAGCGAAGTCTCACCTG-TGCTT-TGA---- 2325
BSNT_04007___ 2347 ACGAGGAGGACATAA 2361
BPUM_2403___r 2325 --------------- 2325
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