Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04007 and BPUM_2403

See DNA alignment / Visit BSNT_04007 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:30
# Commandline: needle
#    -asequence pep-align/BSNT_04007___yrvE.1.24716.seq
#    -bsequence pep-align/BPUM_2403___recJ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04007___yrvE-BPUM_2403___recJ.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04007___yrvE-BPUM_2403___recJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04007___yrvE
# 2: BPUM_2403___recJ
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 786
# Identity:     522/786 (66.4%)
# Similarity:   640/786 (81.4%)
# Gaps:          12/786 ( 1.5%)
# Score: 2751.0
# 
#
#=======================================

BSNT_04007___      1 MLASKMRWEIQRPDQDKVKSLTEQLHITPLVASLLVKRGFDTAESARLFL     50
                     ||.||||||.:.|.::|||||:|.|:|:.|.||||||||.:..|.||.||
BPUM_2403___r      1 MLLSKMRWEYEHPSEEKVKSLSENLNISALTASLLVKRGLEEVEEARSFL     50

BSNT_04007___     51 HTKDADFYDPFEMKGMKEAADRIKQAISQQEKIMIYGDYDADGVTSTSVM    100
                     ..:.|:|:|||.:||||||.:||.:||.:||.|:|:|||||||||||||:
BPUM_2403___r     51 FDQKAEFHDPFLLKGMKEAVERINKAIEEQESIVIFGDYDADGVTSTSVL    100

BSNT_04007___    101 LHTLQKLSAQVDFYIPDRFKEGYGPNEQAFRSIKDRGFSLIITVDTGIAA    150
                     ||||::|||:|||||||||||||||||||||.||::|.||:|||||||||
BPUM_2403___r    101 LHTLKELSAKVDFYIPDRFKEGYGPNEQAFRYIKEQGASLVITVDTGIAA    150

BSNT_04007___    151 VHEAKVAKELGLDVIITDHHEPGPELPDVHAIVHPKQPGCTYPFKELAGV    200
                     |:||::|||:|||:||||||||..|||:..||||||||||.|||||||||
BPUM_2403___r    151 VNEARIAKEIGLDLIITDHHEPSEELPEALAIVHPKQPGCEYPFKELAGV    200

BSNT_04007___    201 GVAFKLAHALLGELPDELLDLAAIGTIADLVPLHDENRLIATLGLERLRR    250
                     |||||:||||||:||.:|||||||||||||||||||||.:|..||.:||:
BPUM_2403___r    201 GVAFKVAHALLGKLPTQLLDLAAIGTIADLVPLHDENRWLAKKGLMQLRQ    250

BSNT_04007___    251 TNRLGLKELIKLSGGDIGEANEETVGFQLAPRLNAVGRIEQADPAVHLLM    300
                     :||||||.|:|.:|..:.||||||||||:|||||||||||||||||||||
BPUM_2403___r    251 SNRLGLKALLKEAGATLEEANEETVGFQIAPRLNAVGRIEQADPAVHLLM    300

BSNT_04007___    301 SEDSFEAEELAAEIDQLNKERQKMVSKMTDEAIEMVEQQGLDQTAIVVAK    350
                     :||..||||||..:.:|||||||:||.:|:|||:|||:.|.||:||||||
BPUM_2403___r    301 TEDKDEAEELARFVQELNKERQKIVSTITEEAIQMVEETGDDQSAIVVAK    350

BSNT_04007___    351 AGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFES    400
                     |||||||||||||||.|.|.|||||||||||..:||||||||.||:||..
BPUM_2403___r    351 AGWNPGVVGIVASKLTDTFSRPAIVLGIDEETQMAKGSARSIPGFDLFFH    400

BSNT_04007___    401 LSECRDILPHFGGHPMAAGMTLKAEDVPDLRSRLNEIADNTLTEEDFIPV    450
                     ||:|||||||||||||||||||:|:|||.||.|||:.|:.|||||||||:
BPUM_2403___r    401 LSKCRDILPHFGGHPMAAGMTLRADDVPLLRERLNQYANETLTEEDFIPI    450

BSNT_04007___    451 QEVDLVCSIEDITVESIAEMNMLSPFGMLNPKPHVLVENAVLEDVRKIGA    500
                     |.||.||.::::|||:|.||.|||||||.||||.:::|:|.||::|.|||
BPUM_2403___r    451 QRVDAVCKVDELTVEAIEEMGMLSPFGMQNPKPFIMIEDARLEEIRTIGA    500

BSNT_04007___    501 NKTHVKMTIRNESSQLDCVGFNKGELQEGIVPGSRISIVGEMSINEWNNR    550
                     |:.|:||::::|...||||||::|:|:|.:|.|||||::|||||||||||
BPUM_2403___r    501 NQNHIKMSLKDEDKLLDCVGFHQGQLKEEVVTGSRISVIGEMSINEWNNR    550

BSNT_04007___    551 KKPQLMIKDAAVSEWQLFDLRGKRTWEDTVSALPSAKRAIVSFKEDSTTL    600
                     ||||||:|||.|.||||||||||..||.|:..|...|..:|.|.||:   
BPUM_2403___r    551 KKPQLMLKDARVDEWQLFDLRGKNDWEKTIFTLDPEKYVVVCFDEDT---    597

BSNT_04007___    601 LQTEDLRREVHVISSKDQAKAFDLDGAYIVLLDPPPSLDMLARLLEGKAP    650
                       .:::...:|.:.: :....||::|.|:|..|.|....:|.:|||.:.|
BPUM_2403___r    598 --KQEVNIPIHHVHA-ENVSTFDVEGKYVVFADVPADEHLLRQLLENQKP    644

BSNT_04007___    651 ERIYFIFLNHEDHFLSTFPARDHFKWYYAFLLKRGAFDVKKHGSELAKHK    700
                     .|:|.:|...||||:|:||:||.|||.|.||||||:|.:|:.|.|||||:
BPUM_2403___r    645 ARVYTVFQRKEDHFMSSFPSRDQFKWLYGFLLKRGSFPLKEQGMELAKHR    694

BSNT_04007___    701 GWSVETINFMTKVFFDLGFVKIENGVLSVVSGAKKRDLTDSQTYQAKQQL    750
                     ||:.:|:.|||||||:||||||||||||:|..|.|:|||.|.:|.|||:|
BPUM_2403___r    695 GWTKDTMIFMTKVFFELGFVKIENGVLSIVRDAPKKDLTASASYTAKQRL    744

BSNT_04007___    751 MELDQKLNYSSAEELKEWLNKLMKQDSEAYESTRRT    786
                     |||||.|.||||:|||||||.:|.:.|...      
BPUM_2403___r    745 MELDQTLTYSSAKELKEWLNSMMSEVSPVL------    774


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

Amino acid alignment: BSNT_04007 and BPUM_2403

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
