Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04019 and BPUM_2412

See Amino acid alignment / Visit BSNT_04019 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:32
# Commandline: needle
#    -asequence dna-align/BSNT_04019___tgt.1.24716.seq
#    -bsequence dna-align/BPUM_2412___tgt.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04019___tgt-BPUM_2412___tgt.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04019___tgt-BPUM_2412___tgt.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04019___tgt
# 2: BPUM_2412___tgt
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1169
# Identity:     902/1169 (77.2%)
# Similarity:   902/1169 (77.2%)
# Gaps:          46/1169 ( 3.9%)
# Score: 3480.5
# 
#
#=======================================

BSNT_04019___      1 --GTGGCTGAACAACCAATACGCTATGAATTTATAAAAGAATGCAAACAA     48
                       ||.||  ||..|||.|||||.|||||.||.||.|||..||||||||||
BPUM_2412___t      1 TTGTCGC--AATTACCGATACGTTATGAGTTCATTAAATCATGCAAACAA     48

BSNT_04019___     49 ACAGGAGCGCGGCT-GGGCAAAGTGCATACGCCTCACGGCTCCTTCGAAA     97
                     |||||.||.||.|| |||| ..||.|||||.||.||||||||.||.||.|
BPUM_2412___t     49 ACAGGTGCACGACTCGGGC-GCGTTCATACACCGCACGGCTCATTTGACA     97

BSNT_04019___     98 CGCCGGTTTTTATGCCGGTCGGCACACTGGCGACAGTCAAAACAATGTCG    147
                     ||||.||.|||||||||||.||.||||||||.|||||||||||.|||.|.
BPUM_2412___t     98 CGCCTGTATTTATGCCGGTAGGTACACTGGCTACAGTCAAAACGATGGCA    147

BSNT_04019___    148 CCTGAAGAGCTGAAAGCAATGGATGCAGGCATCATTTTGAGCAACACTTA    197
                     ||||||||.||.||.||||||||.|||||.|||||.||.|||||.||.||
BPUM_2412___t    148 CCTGAAGAACTAAAGGCAATGGAAGCAGGTATCATCTTAAGCAATACGTA    197

BSNT_04019___    198 TCATCTATGGCTTCGTCCGGGCCAAGACATTGTCAAAGAAGCGGGCGGGC    247
                     .||.||||||||.||||||||.||.||||||||.||||||||.|||||.|
BPUM_2412___t    198 CCACCTATGGCTCCGTCCGGGTCATGACATTGTGAAAGAAGCAGGCGGCC    247

BSNT_04019___    248 TCCATAAATTTATGAACTGGGACCGCGCAATTTTAACAGATTCAGGCGGT    297
                     |.||.|||||||||||||||||.||.||.||||||||.||||||||||||
BPUM_2412___t    248 TGCACAAATTTATGAACTGGGATCGAGCGATTTTAACCGATTCAGGCGGT    297

BSNT_04019___    298 TTTCAGGTCTTTTCTTTAAGCAAGTTTCGTAATATAGAGGAAGAGGGTGT    347
                     ||.||.|||||.|||||.||..|.|||.|.||.||.||.|||||.||.||
BPUM_2412___t    298 TTCCAAGTCTTCTCTTTGAGTGAATTTAGAAAAATTGAAGAAGAAGGCGT    347

BSNT_04019___    348 CCATTTCCGCAATCATCTAAATGGAGACAAGCTGTTTTTATCTCCGGAAA    397
                     .||.|||||.||||||.||||||||||.|||||||||.|.|||||.||.|
BPUM_2412___t    348 TCACTTCCGTAATCATTTAAATGGAGATAAGCTGTTTCTTTCTCCTGAGA    397

BSNT_04019___    398 AAGCGATGGAGATCCAAAACGCACTCGGCTCTGATATTATGATGGCGTTT    447
                     |.||||||||.||||||||.||.||.||||||||||||||||||||.|||
BPUM_2412___t    398 AGGCGATGGACATCCAAAATGCGCTTGGCTCTGATATTATGATGGCATTT    447

BSNT_04019___    448 GACGAATGCCCACCATACCCGGCGGAGTACGACTACATGAAGAGGTCAGT    497
                     ||.||||||||.|||||.||.||.||.|||||.||||||||..|.||.||
BPUM_2412___t    448 GATGAATGCCCGCCATATCCAGCAGAATACGATTACATGAAACGTTCTGT    497

BSNT_04019___    498 TGAACGGACAAGCCGTTGGGCGGAACGCTGCCTGAATGCCCA-CAATCGT    546
                     .||.|||||||||.|.|||||.|||||||||||.|..||.|| ||| |||
BPUM_2412___t    498 AGAGCGGACAAGCAGATGGGCAGAACGCTGCCTAACAGCGCATCAA-CGT    546

BSNT_04019___    547 CAGGATGAACAAGGGCTGTTTGGTATTGTACAAGGCGGAGAATATGAAGA    596
                     |..||.||.|||||.||||||||.||..|.||||||||||||||.|||||
BPUM_2412___t    547 CCAGAGGATCAAGGACTGTTTGGAATCATCCAAGGCGGAGAATACGAAGA    596

BSNT_04019___    597 TCTGCGGACACAAAGTGCGAAGGA-CTTGATTTCGCTTGATTTTCCCGGA    645
                     .||.||.|.|||||||||.||.|| ||.| |.||.||||||||.||.||.
BPUM_2412___t    597 GCTTCGTAAACAAAGTGCAAAAGATCTCG-TGTCACTTGATTTCCCAGGC    645

BSNT_04019___    646 TATGCTATAGGCGGATTGTCTGTTGGTGAACCGAAGGATGTCATGAATCG    695
                     ||.|||||.||.||.||.||||||||.|||||.||.|||||.|||||.||
BPUM_2412___t    646 TACGCTATCGGAGGTTTATCTGTTGGGGAACCAAAAGATGTGATGAACCG    695

BSNT_04019___    696 TGTACTCGAATTTACAACACCGCTCTTGCCGAAG--GATAAACCGAGATA    743
                     ||||||.||.||.|||||.||..|.||.||  ||  ||.||.||.||.||
BPUM_2412___t    696 TGTACTTGAGTTCACAACGCCATTGTTACC--AGCAGACAAGCCAAGGTA    743

BSNT_04019___    744 TCTGATGGGAGTAGGTTCTCCGGACGCACTGATCGACGGAGCGATCCGCG    793
                     ..|.|||||.||.||.||.||.||..|..|.||.|||||.||.||.||||
BPUM_2412___t    744 CTTAATGGGCGTCGGCTCGCCAGATTCCTTAATTGACGGTGCCATTCGCG    793

BSNT_04019___    794 GGGTCGATATGTTTGACTGTGTGCTGCCTACACGGATTGCAAGAAACGGC    843
                     |.||.||||||||||||||.||..||||.|||||.|||||.||||||||.
BPUM_2412___t    794 GTGTAGATATGTTTGACTGCGTATTGCCAACACGAATTGCGAGAAACGGT    843

BSNT_04019___    844 ACAGTGTTTACTGCT----------GAAGGACGACTCAATATGAAAAATG    883
                     ||          |||          ||||||||.||...|.|||||||||
BPUM_2412___t    844 AC----------GCTCATGACGAGCGAAGGACGTCTTGTTGTGAAAAATG    883

BSNT_04019___    884 CGAAATTTGAAAGAGACTTCCGTCCGATTGATGAAGAGTGTGATTGCTAT    933
                     |.||||.|||..|.||.||..|.||.||.||||||.|.|||||.|||||.
BPUM_2412___t    884 CAAAATATGAGCGTGATTTTAGACCAATCGATGAAAATTGTGACTGCTAC    933

BSNT_04019___    934 ACATGTAAAAACTACACTCGCGCGTACATTAGGCACTTGATTCGCTGC--    981
                     |||||||||||||||||.||.||.||.|||||.||.|||||      |  
BPUM_2412___t    934 ACATGTAAAAACTACACACGTGCTTATATTAGACATTTGAT------CAA    977

BSNT_04019___    982 ----AATGAAACATTCGGCCTTCGATTAACAACTTACCATAACCTTCATT   1027
                         ||||||||.|||||..||||||||||||||||.|||||.|||||||
BPUM_2412___t    978 AACAAATGAAACGTTCGGAATTCGATTAACAACTTATCATAATCTTCATT   1027

BSNT_04019___   1028 TTCTGTTACACTTAATGGAGCAGGTAAGACAGGCTATTCGCGAGGATCGT   1077
                     ||||||||.|.|||||||||||.||.|||.|.|||||.||.|||||||||
BPUM_2412___t   1028 TTCTGTTAAAATTAATGGAGCAAGTGAGAGAAGCTATCCGTGAGGATCGT   1077

BSNT_04019___   1078 CTGGGTGATTTCAGAGAAGAGTTCTTTGAGCGTTACGGCTATAACAAGCC   1127
                     .|.||||||||.|.|||||||||.||||||||||||||||.||||.|.||
BPUM_2412___t   1078 TTAGGTGATTTTAAAGAAGAGTTTTTTGAGCGTTACGGCTTTAACGAACC   1127

BSNT_04019___   1128 AAATGCGAAAAGCTTCTAA   1146
                     .||||||||||.|||.|||
BPUM_2412___t   1128 GAATGCGAAAAACTTTTAA   1146


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