Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04025 and BPUM_2417

See Amino acid alignment / Visit BSNT_04025 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:32
# Commandline: needle
#    -asequence dna-align/BSNT_04025___bofC.1.24716.seq
#    -bsequence dna-align/BPUM_2417___bofC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04025___bofC-BPUM_2417___bofC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04025___bofC-BPUM_2417___bofC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04025___bofC
# 2: BPUM_2417___bofC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 599
# Identity:     332/599 (55.4%)
# Similarity:   332/599 (55.4%)
# Gaps:         172/599 (28.7%)
# Score: 923.5
# 
#
#=======================================

BSNT_04025___      1 ------------GTGAAACGATTCAG---CACGGCGTATCTTTTG----C     31
                                 .|||||.|.||| |   ||.|.|.||||  .||    .
BPUM_2417___b      1 GTGAAAGTGAAGATGAAATGTTTC-GTTACAGGACTTATC--ATGACAAG     47

BSNT_04025___     32 TGGGCATTCTTT-GCTCAGCGGCAGTATTTTTAATA-GGAGCTCCTTCCC     79
                     ||.||.||.||| |||  ||||           ||| ||||         
BPUM_2417___b     48 TGTGCTTTTTTTCGCT--GCGG-----------ATATGGAG---------     75

BSNT_04025___     80 GCG--------CACTTG-----GCGCGGAAGTGGAGCACTATGAGCCGCT    116
                       |        ||||||     ||     |||..|.|.|.||.|.|    
BPUM_2417___b     76 --GGAAAAGAACACTTGCAAAAGC-----AGTCAAACTCGATCACC----    114

BSNT_04025___    117 GCAGGTGCATGTGCAGCTTGAAAAGGTGTATTTGGACGGCGATGTCAGCA    166
                               ||.|||||||||||.||.|||.|.|||||.|||||.||.|
BPUM_2417___b    115 ----------GTACAGCTTGAAAAAGTCTATCTAGACGGAGATGTGAGTA    154

BSNT_04025___    167 TTGA----------GCATAGGCAT-----GAAAAAGTGTTTTCTATGGAT    201
                     ||||          ||||   |||     ||.|||            ||.
BPUM_2417___b    155 TTGAAAGACACCGGGCAT---CATTAGAAGACAAA------------GAC    189

BSNT_04025___    202 GATTTTTGG--GCAGCTTATGCCGGATGGACGCTTGTGGAACAAAAAAAG    249
                     ...||.|||  ||||  |||...||.||||||||.||.|||||.|||.||
BPUM_2417___b    190 ACATTCTGGTCGCAG--TATAAAGGCTGGACGCTAGTAGAACAGAAAGAG    237

BSNT_04025___    250 GGATATGTGCTCTTCCGGAAGCAAATGGACGATATATCTCCGCTCAGCAA    299
                     |..|.||.|||.||..|.||||||||.||.|||||.|||||..|.||.||
BPUM_2417___b    238 GATTTTGCGCTTTTTAGAAAGCAAATTGATGATATCTCTCCATTAAGTAA    287

BSNT_04025___    300 GGTCAACGGGTATATCGGTGTATCGGATAATGGAGTGATTTCTACTTTTC    349
                     .|..||.||.||||||||..||||.||..|.||.|||||||||||.||||
BPUM_2417___b    288 AGCAAATGGATATATCGGATTATCAGAGGACGGTGTGATTTCTACGTTTC    337

BSNT_04025___    350 ATGGGCGGCCTGAGCCAGCT--TCCGAACCAATTCAGTCT-TTTTTTCAA    396
                     ||||..|||||||  |.|||  .|.||.||.||||| ||| |||||||||
BPUM_2417___b    338 ATGGAAGGCCTGA--CGGCTGGGCGGAGCCCATTCA-TCTCTTTTTTCAA    384

BSNT_04025___    397 ATTGA---------TTTAGAAAGGC---TGGA-AAGCCATATGCAAAAAA    433
                     |||||         |||||||||.|   |||| .|||             
BPUM_2417___b    385 ATTGATACGTCCCGTTTAGAAAGTCATGTGGAGGAGC-------------    421

BSNT_04025___    434 ATCTGCTGA--AAGGCATTCCATTTCGGACAAAAGCGGAGTTTGAGGATG    481
                     |.||  |||  ||||||||||.|||||.|||||.|..||.||||||.|||
BPUM_2417___b    422 AGCT--TGAGCAAGGCATTCCTTTTCGAACAAAGGATGAATTTGAGCATG    469

BSNT_04025___    482 TCATCGAACATATGAAGACATACAGCGGGTAA-----------------    513
                     |..|.|||...|||||..|.|||.|     ||                 
BPUM_2417___b    470 TGCTTGAAGTCATGAAACCTTACCG-----AAATGAAATATCGTTTTAA    513


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.