Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04065 and BPUM_2441

See Amino acid alignment / Visit BSNT_04065 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:34
# Commandline: needle
#    -asequence dna-align/BSNT_04065___mreD.1.24716.seq
#    -bsequence dna-align/BPUM_2441___mreD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04065___mreD-BPUM_2441___mreD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04065___mreD-BPUM_2441___mreD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04065___mreD
# 2: BPUM_2441___mreD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 540
# Identity:     355/540 (65.7%)
# Similarity:   355/540 (65.7%)
# Gaps:          42/540 ( 7.8%)
# Score: 1077.5
# 
#
#=======================================

BSNT_04065___      1 GTGAAACGTTTCCTTCTCCCTTTCGTTATGATGCTTGTTTTTTCTGCG--     48
                     ||||.||||.|||||||..|||||||.|||.||     |||.|||.||  
BPUM_2441___m      1 GTGAGACGTGTCCTTCTTGCTTTCGTCATGTTG-----TTTATCTTCGTA     45

BSNT_04065___     49 ---GAAAGCATTTTTACAGATTTGGTGCATTTTCCTTTCGTTACAGATGA     95
                        ||.||.||||||...|||.|.|||.|..|.||.||.|||.||||..|
BPUM_2441___m     46 TTTGACAGTATTTTTGTCGATCTAGTGAAGCTCCCATTTGTTTCAGACAA     95

BSNT_04065___     96 CCAAGTGCTCGCCCCGCGTTTTTTGATGCTTGTATTGATATTCATGTCGG    145
                     .|||.|..|.||.||.|.|||..|..|.||.|.|.|..||||.|||.|||
BPUM_2441___m     96 TCAAATTTTAGCTCCTCATTTCATCTTACTCGCACTCGTATTTATGACGG    145

BSNT_04065___    146 CTTTTATCAACCAAAAACACGCGATGATTTACGGATTTATTTTTGGTTTT    195
                     |||||.|.||.||||||.|.|...||||||.|||.|||||.|||||..||
BPUM_2441___m    146 CTTTTGTGAATCAAAAATATGGTGTGATTTTCGGTTTTATCTTTGGACTT    195

BSNT_04065___    196 CTATATGACATGAACTATACAAGTCTATTAGGCGTTTACATGTTTGGTTT    245
                     .|||||||.||....||||||.|..||.|.||.|||.|.||||||||.||
BPUM_2441___m    196 TTATATGATATTTCGTATACAGGCATACTTGGTGTTCATATGTTTGGCTT    245

BSNT_04065___    246 TGCAGGGCTATGCTATTTGGCT-TCAAAAGCGTTTAAAGTGTTACATACA    294
                     ||.||.|||.|||||||| ||| .|.|||||.||||||||.|    |.||
BPUM_2441___m    246 TGGAGCGCTCTGCTATTT-GCTAGCGAAAGCCTTTAAAGTTT----TGCA    290

BSNT_04065___    295 AACGCATTTGTAGTGATATTGATAGCAGTTCTGGCTGT---------CTG    335
                     ||||.||.|||     ||.||.|.|    |||..||||         |||
BPUM_2441___m    291 AACGAATATGT-----TAGTGGTCG----TCTTTCTGTCGATTATTGCTG    331

BSNT_04065___    336 TCTGC----TCGAATTTTACGTATTCGGCATTCAGTCTTTGATTCATAAA    381
                     |.|.|    |.||.|||||.||.|.||||.||||..|....|||||...|
BPUM_2441___m    332 TTTCCGTAATGGAGTTTTATGTGTACGGCGTTCAAGCGACAATTCAACCA    381

BSNT_04065___    382 GACATTATGACGTTTA--ACGGATTTGTGCTTGACCGGTTTATACCGACA    429
                     |..||||||.||||||  |||  |.|||..|.||.||.|||||.||.||.
BPUM_2441___m    382 GGGATTATGCCGTTTAATACG--TATGTCATCGAACGCTTTATTCCAACG    429

BSNT_04065___    430 ATTTTATTAAATATTGCAGCAGCTCTTATTCTTGTTCTGCCATTTAGATT    479
                     |||.|.|||||||.|||.||..||||.||.||||||.||||..||||..|
BPUM_2441___m    430 ATTCTTTTAAATACTGCTGCGTCTCTCATACTTGTTGTGCCGCTTAGGCT    479

BSNT_04065___    480 GTTTTTTATGAGTCTAAAGAAAGAATTGAGAGATGAGTAA    519
                     .|||||.||.|...|.||..|||||.|||..||.||.|||
BPUM_2441___m    480 CTTTTTCATCAACATGAAACAAGAACTGATCGACGAATAA    519


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