Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04140 and BPUM_2491
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:39
# Commandline: needle
# -asequence dna-align/BSNT_04140___rph.1.24716.seq
# -bsequence dna-align/BPUM_2491___rph.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04140___rph-BPUM_2491___rph.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04140___rph-BPUM_2491___rph.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04140___rph
# 2: BPUM_2491___rph
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 757
# Identity: 546/757 (72.1%)
# Similarity: 546/757 (72.1%)
# Gaps: 47/757 ( 6.2%)
# Score: 1917.5
#
#
#=======================================
BSNT_04140___ 1 ATGAGACATGACGGAAGACAACACGATGAGCTGCGTCCAAT-----CACA 45
||||||...||.|.||| ||||.|||| |.||| .|.|
BPUM_2491___r 1 ATGAGATTAGATGAAAG---ACACTATGA-------CGAATTAAGAAAAA 40
BSNT_04140___ 46 TTCGATTTGGA------TTTTATCAGCCATCCGGAAGGTTCTGTTCTAAT 89
|| ||..|.|| .|..||.|..|||||.|||||.|||||..||||
BPUM_2491___r 41 TT-GAAATAGAGGCAGGCTACATTACGCATCCAGAAGGCTCTGTCTTAAT 89
BSNT_04140___ 90 AACAGCAGGGAATACAAAGGTAATCTGCAACGCGTCTGTTGAGGATCGCG 139
..||||.||.|||||.|||||.||.||.|||||.||..|.||.||.||||
BPUM_2491___r 90 CTCAGCGGGCAATACGAAGGTGATTTGTAACGCATCCATCGAAGACCGCG 139
BSNT_04140___ 140 TACCGCCGTTTTTGCGGGGCGGAGGGAAAGGCTGGATTACAGCAGAGTAC 189
||||.||.|||||..|.||.|.|||.||||||||||||||||||||.||.
BPUM_2491___r 140 TACCTCCTTTTTTAAGAGGAGAAGGAAAAGGCTGGATTACAGCAGAATAT 189
BSNT_04140___ 190 AGCATGCTGCCGCGGGCAACAAACCAAAGAACAATCAGAGAATCTTCTAA 239
||||||||.||..|.|||||....||||||||.||.||||||||.|||||
BPUM_2491___r 190 AGCATGCTTCCAAGAGCAACCGCTCAAAGAACCATTAGAGAATCATCTAA 239
BSNT_04140___ 240 GGGGAAAATTTCCGGCAGAACAATGGAGATCCAACGCCTGATCGGCCGCG 289
.||.|||.|..|.||..|.||||||||.||.||.||..|.||.||.||.|
BPUM_2491___r 240 AGGCAAAGTGACAGGACGTACAATGGAAATTCAGCGATTAATTGGACGAG 289
BSNT_04140___ 290 CGCTTCGAGCTGTTGTAGATCTGGAAAAGCTCGGTGAACGGACGATTTGG 339
|.||.||.||.||.||.||..|.||||||||.||.|||||.|||||||||
BPUM_2491___r 290 CACTCCGTGCAGTCGTTGACTTAGAAAAGCTTGGCGAACGCACGATTTGG 339
BSNT_04140___ 340 ATTGACTGTGATGTCATTCAAGCTGATGGAGGAACTAGAACAGCTTCCAT 389
|||||||||||||||||||||||.||.|||||.||..|.|||||.|||||
BPUM_2491___r 340 ATTGACTGTGATGTCATTCAAGCAGACGGAGGCACACGCACAGCATCCAT 389
BSNT_04140___ 390 TACAGGCGCATTTCTTGCTATGGCGATTGCGATTGGCAAGCT--GATCAA 437
||||||.||.|||.||||.|||.||.||||||||...||||| ||.|
BPUM_2491___r 390 TACAGGTGCTTTTGTTGCCATGACGCTTGCGATTCAAAAGCTCCGAGC-- 437
BSNT_04140___ 438 AGCAGGAACAATCAAGAC-AAGTCCGATCACTGATTTTCTTGCTGCGATC 486
||.|||..|.||||| || ||..||.||||||||||.|.|.||.|||||.
BPUM_2491___r 438 AGAAGGTGCCATCAA-ACAAAACCCAATCACTGATTATTTAGCGGCGATA 486
BSNT_04140___ 487 TCTGTTGGAATTGATAAGGAACAGGGAATTTTGTTAGATTTAAATTATGA 536
||.||.|||||||||....|.||.||..||.|||||||||||||||||||
BPUM_2491___r 487 TCCGTCGGAATTGATTCTCAGCAAGGTCTTCTGTTAGATTTAAATTATGA 536
BSNT_04140___ 537 AGAAGATTCCTCCGCTGAAGTTGACATGAATGTCATCATGACAGGCAGC- 585
|||||||||.||.||||||||.||.|||||.||||||||||||||| ||
BPUM_2491___r 537 AGAAGATTCTTCAGCTGAAGTGGATATGAACGTCATCATGACAGGC-GCT 585
BSNT_04140___ 586 GGCCGTTTTGTGGAACTGCAGGGAACCGGGGAAGAGGCGACTTTTTCAAG 635
||.||.|||||.|||||.||.||.||.||.|||||.|||||.||.|||||
BPUM_2491___r 586 GGACGCTTTGTTGAACTTCAAGGCACAGGCGAAGAAGCGACATTCTCAAG 635
BSNT_04140___ 636 AGAGGATCTGAACGGTCTTCTGGGTCTTGCGGAAAAAGGAATTCAAGAGC 685
|||..|.||.|||||.||.||.|.|.|.||.|||||.||.||..||||||
BPUM_2491___r 636 AGAACAGCTAAACGGACTGCTTGATTTAGCCGAAAAGGGCATCAAAGAGC 685
BSNT_04140___ 686 TGATTGACAAGCAAAAAGAAGTG-CTGGGTGATTCTCTGCCAGAACTGA- 733
|.|||||.||||||||||.|||| |.|| ||||.|.|
BPUM_2491___r 686 TAATTGAAAAGCAAAAAGCAGTGACAGG-------------AGAAGTCAT 722
BSNT_04140___ 734 --AATAA 738
|||||
BPUM_2491___r 723 CGAATAA 729
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