Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04174 and BPUM_2519

See Amino acid alignment / Visit BSNT_04174 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:42
# Commandline: needle
#    -asequence dna-align/BSNT_04174___yshA.1.24716.seq
#    -bsequence dna-align/BPUM_2519___yshA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04174___yshA-BPUM_2519___yshA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04174___yshA-BPUM_2519___yshA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04174___yshA
# 2: BPUM_2519___yshA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 260
# Identity:     209/260 (80.4%)
# Similarity:   209/260 (80.4%)
# Gaps:           4/260 ( 1.5%)
# Score: 826.5
# 
#
#=======================================

BSNT_04174___      1 TTGTCTGACGGCAAAAAAACAAAAACAACCGTTGACATTTACGGCCAGCA     50
                     ||||||||||||...|||||.||||||||.|||||.||||||||.|||..
BPUM_2519___y      1 TTGTCTGACGGCGGTAAAACGAAAACAACAGTTGAGATTTACGGACAGTC     50

BSNT_04174___     51 CTTCACGATTGTCGGTGAAGAAA-GCAGA-GCCCATATGAGGTATGTCGC     98
                     ||..|||||..|||||.|||||| |.||| |  ||||||.|..|.||.||
BPUM_2519___y     51 CTATACGATCATCGGTCAAGAAACGAAGATG--CATATGCGACACGTTGC     98

BSNT_04174___     99 CGGAATTGTTGATGATAAAATGAGAGAAATCAATGAAAAAAATCCATACC    148
                     ...|||||||||||||||||||||||||||.|||||||||||.|||||||
BPUM_2519___y     99 TTCAATTGTTGATGATAAAATGAGAGAAATAAATGAAAAAAACCCATACC    148

BSNT_04174___    149 TTGATATAAATAAACTTGCAGTGCTGACAGCGGTAAATGTGGTGCACGAT    198
                     ||||||||||.|||.|.||.||.||||||||.||.|||||.||.|||||.
BPUM_2519___y    149 TTGATATAAACAAATTAGCTGTACTGACAGCAGTCAATGTCGTCCACGAC    198

BSNT_04174___    199 TATGTCAAATTACAAGAGAAATGTGAAAAACTGGAGCGGCAGCTTAAAGA    248
                     ||..|.||||||.|||||.|||..||||||||.|||...|||||||||||
BPUM_2519___y    199 TACTTGAAATTAAAAGAGCAATACGAAAAACTAGAGATTCAGCTTAAAGA    248

BSNT_04174___    249 AAAGGATTGA    258
                     ||||||.|||
BPUM_2519___y    249 AAAGGAATGA    258


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