Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04210 and BPUM_2529

See Amino acid alignment / Visit BSNT_04210 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:44
# Commandline: needle
#    -asequence dna-align/BSNT_04210___ysdA.1.24716.seq
#    -bsequence dna-align/BPUM_2529___ysdA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04210___ysdA-BPUM_2529___ysdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04210___ysdA-BPUM_2529___ysdA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04210___ysdA
# 2: BPUM_2529___ysdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 304
# Identity:     169/304 (55.6%)
# Similarity:   169/304 (55.6%)
# Gaps:          74/304 (24.3%)
# Score: 358.5
# 
#
#=======================================

BSNT_04210___      1 ATGATTATTGCAGCTTATTTGT--------TATTGATTAAT--CTGTGCG     40
                     ||||.|||.||  .|||.||||        |.|||.|.|||  ||.|  |
BPUM_2529___y      1 ATGAATATCGC--GTTAATTGTGCTGCTCATCTTGGTAAATGGCTAT--G     46

BSNT_04210___     41 GTTTTTGGGTGATGGGCATTGACAAACGC------AAAGCGCAGCAGCAC     84
                     ||||.|...|.|||||....|||||.|||      |||||      |||.
BPUM_2529___y     47 GTTTCTTTCTTATGGGAGAGGACAAGCGCCGGGCAAAAGC------GCAT     90

BSNT_04210___     85 AAGTGGAGAATTTCTGAAGACCGGC-----TGTGG-CTGATAGCCATCGT    128
                     ||.|||||.|||||.||     |||     |.||| .||.| |||.|..|
BPUM_2529___y     91 AAATGGAGGATTTCAGA-----GGCGCACTTATGGAGTGCT-GCCGTGCT    134

BSNT_04210___    129 ATTTGGAGC-GCTCGGT-GTCTGGCTTGGCATGCAA-ACCTTCAGACATA    175
                     .|||||.|| |||.|.| ||.|  ||.||.|||||| |..||| |.||||
BPUM_2529___y    135 TTTTGGGGCTGCTGGATCGTAT--CTAGGGATGCAATATTTTC-GTCATA    181

BSNT_04210___    176 AAACGAAACACGCT-TCTTTTAAGTACGGAGTACCG-CTTCTTC-TGGT-    221
                     ||||.||.||..|| .||||.||.|..|.|...||| .||..|| |||| 
BPUM_2529___y    182 AAACAAAGCATCCTGCCTTTCAAATTGGCATGCCCGTGTTAATCATGGTG    231

BSNT_04210___    222 -AATTGAAGCGATTCTCAT----CGCTATTTACTACAGCCCGTTTGATTT    266
                      |.||||        ||||    .|.|||      |||..|.|.|||   
BPUM_2529___y    232 CAGTTGA--------TCATATTAGGATAT------CAGTTCATCTGA---    264

BSNT_04210___    267 ATAA    270
                         
BPUM_2529___y    264 ----    264


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