Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04217 and BPUM_2534

See Amino acid alignment / Visit BSNT_04217 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:44
# Commandline: needle
#    -asequence dna-align/BSNT_04217___lrgA.1.24716.seq
#    -bsequence dna-align/BPUM_2534___ysbA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04217___lrgA-BPUM_2534___ysbA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04217___lrgA-BPUM_2534___ysbA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04217___lrgA
# 2: BPUM_2534___ysbA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 495
# Identity:     298/495 (60.2%)
# Similarity:   298/495 (60.2%)
# Gaps:         105/495 (21.2%)
# Score: 841.5
# 
#
#=======================================

BSNT_04217___      1 ATGAGTGCTAAAAAAGTGTACGGGTTTTTAACACAAGCATTTATTTTTGC     50
                     ||||||||.|..|||||.||.||.|||.||.|.|||||||||||.|||||
BPUM_2534___y      1 ATGAGTGCCACTAAAGTATATGGATTTCTATCTCAAGCATTTATCTTTGC     50

BSNT_04217___     51 CGTCATTATGCTGGTTTCAAATATGATTGC--CGCTATTGTCCCAATACC     98
                     ...|.|.|||.|.|||||.|||.|.|||.|  .| |||| |.||.||.||
BPUM_2534___y     51 AACCGTAATGTTCGTTTCTAATCTCATTTCAATG-TATT-TACCCATTCC     98

BSNT_04217___     99 TATCCCGGCATCGGTTGTAGGGTTGGTCTTATTATTTCTCCTATTATGTT    148
                     .||.||.|||||.||     |.||||||    ||.||||..|||| ||||
BPUM_2534___y     99 GATGCCTGCATCTGT-----GATTGGTC----TAGTTCTATTATT-TGTT    138

BSNT_04217___    149 T----------GAAAGTCATTAAACTGGAACAAGTGGAAACGC---TCGG    185
                     |          ||||.||.|.||||||||.||.|||||   ||   |.||
BPUM_2534___y    139 TTGCTGACAACGAAAATCGTCAAACTGGAGCAGGTGGA---GCAATTAGG    185

BSNT_04217___    186 AACGTCTTTAAC----CTCTCTGATCGGATTTTTATTTGTTCCGTCAGGT    231
                     .||.||.||.||    |||    ||..|.|||.||||||||||.||.|||
BPUM_2534___y    186 TACATCATTGACAGGGCTC----ATTAGCTTTCTATTTGTTCCCTCTGGT    231

BSNT_04217___    232 ATATCTGTTATGAATTCGCTTGGTGTGATGC-AGCAATACGGCCTGCAAA    280
                     ||.||.|||||..|.||.||.|||||.|||| ||.|.|| ||..|||||.
BPUM_2534___y    232 ATTTCGGTTATTCAATCACTAGGTGTCATGCAAGAAGTA-GGTGTGCAAG    280

BSNT_04217___    281 T------TGTTCTTGTCATTCTGCTCGCAACGATTATTCTGCTGGGGGCT    324
                     |      ||||.|..|||||      |||||||||||..||||.|..||.
BPUM_2534___y    281 TCGTCGGTGTTATCATCATT------GCAACGATTATGTTGCTTGCAGCG    324

BSNT_04217___    325 ACGGGATTGTTTTCTCAGCTGATTCTGTCGC--TGAGCGGAAAACGCAAA    372
                     ||.||..|.|||||.||||   ||||...||  |.|.|.||      |||
BPUM_2534___y    325 ACAGGGCTATTTTCACAGC---TTCTCATGCAATTATCAGA------AAA    365

BSNT_04217___    373 ACCGCAGCGGACATGAAAACAAAAACAGTGCAAAGCCCGCAGAACAATAA    422
                     |||.|||         ||||..|||.|| .||||    |.|||.||| |.
BPUM_2534___y    366 ACCACAG---------AAACGTAAAGAG-ACAAA----GGAGAGCAA-AT    400

BSNT_04217___    423 CGAACTCGTTCAC--------------------------CATTAA    441
                     || ||||.|||.|                          ||||||
BPUM_2534___y    401 CG-ACTCCTTCTCATTCTAATAAACCAGCTTCAAGTACGCATTAA    444


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