Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04238 and BPUM_2547
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:45
# Commandline: needle
# -asequence dna-align/BSNT_04238___gapB.1.24716.seq
# -bsequence dna-align/BPUM_2547___gapB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04238___gapB-BPUM_2547___gapB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04238___gapB-BPUM_2547___gapB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04238___gapB
# 2: BPUM_2547___gapB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1038
# Identity: 773/1038 (74.5%)
# Similarity: 773/1038 (74.5%)
# Gaps: 30/1038 ( 2.9%)
# Score: 2796.0
#
#
#=======================================
BSNT_04238___ 1 ATGAAGGTAAAAGTAGCGATCAACGGGTTTGGAAGAATCGGAAGAATGGT 50
|||||||||||||.|||||||||.||||||||.|||||.|||.|.|||||
BPUM_2547___g 1 ATGAAGGTAAAAGCAGCGATCAATGGGTTTGGCAGAATTGGACGCATGGT 50
BSNT_04238___ 51 TTTTAGAAAAGCGATGTTAGACGATCAAATTCAAGTAGTGGCCATTAACG 100
.||.||||||||.|||.|.||.||||||||||||.|.||.||..|.||||
BPUM_2547___g 51 CTTCAGAAAAGCAATGCTTGATGATCAAATTCAAATTGTAGCGGTGAACG 100
BSNT_04238___ 101 CCAGCTATTCCGCAGAAACGCTGGCTCATTTAATAAAGTATGACACAATT 150
|.||||||.|.||.||||||||.||.||||||||.||.||||||||||.|
BPUM_2547___g 101 CAAGCTATCCTGCCGAAACGCTAGCACATTTAATTAAATATGACACAAAT 150
BSNT_04238___ 151 CACGGCAGATACGACAAAGAGGTTGTGGCTGGTGAAGATAG----CCTGA 196
||.||..|.|||| ||...|.||||...|..|||||| | |||||
BPUM_2547___g 151 CATGGACGTTACG---AATGCGATGTGATAGCAGAAGAT-GACGCCCTGA 196
BSNT_04238___ 197 TCGTAAATGGAAAGAAAGTGCTTTTGTTAAACAGCCGTGATCCAAAACAG 246
|.||||||||.||.|.||||||||||.|.||.|.|.|.||.|||||.|||
BPUM_2547___g 197 TTGTAAATGGGAAAAGAGTGCTTTTGCTCAATAACAGAGACCCAAAGCAG 246
BSNT_04238___ 247 CTGCCTTGGCGGGAATATGATATTGACATAGTCGTCGAAGCAACAGGGAA 296
||.||.|||.|.||...||..|||||.||.|||.|.||||||||||||||
BPUM_2547___g 247 CTTCCATGGGGAGAGCTTGGGATTGATATCGTCATAGAAGCAACAGGGAA 296
BSNT_04238___ 297 GTTTAATGCTAAAGATAAAGCGATGGGCCATATAGAAGCAGGTGCAAAAA 346
.||||||.|.||||||.|||||||||||||||||||.||.||.||.||||
BPUM_2547___g 297 ATTTAATTCAAAAGATCAAGCGATGGGCCATATAGATGCCGGAGCGAAAA 346
BSNT_04238___ 347 AAGTGATTTTGACCGCTCCGGGAAAAAATGAAGACGTTACCATTGTGATG 396
||||..|..|.||.|||||.||.|||||||||||||||||.|||||.|||
BPUM_2547___g 347 AAGTCGTACTTACAGCTCCAGGTAAAAATGAAGACGTTACAATTGTAATG 396
BSNT_04238___ 397 GGCGTAAATGAGGACCAATTCGACGCTGAGCGCCATGTCATTATTTCAAA 446
|||||.||||||||..|..|.||..||||....||.|||.||||||||||
BPUM_2547___g 397 GGCGTTAATGAGGATGATCTTGATCCTGAAAAGCACGTCGTTATTTCAAA 446
BSNT_04238___ 447 TGCGTCATGCACGACAAATTGCCTTGCGCCTGTTGTAAAAGTGCTGGATG 496
.||.||.||.||.|||||.||..|.||.||.|||||.|||.||.|.||||
BPUM_2547___g 447 CGCATCTTGTACAACAAACTGTTTAGCACCAGTTGTCAAATTGTTAGATG 496
BSNT_04238___ 497 AAGAGTTTGGCATTGAGAGCGGTCTGATGACTACAGTTCATGCGTATACG 546
|.||.||.|||||.||.|.||||.|.|||||.||.||||||||.|||||.
BPUM_2547___g 497 ATGAATTCGGCATCGACAACGGTTTAATGACAACGGTTCATGCATATACA 546
BSNT_04238___ 547 AATGACCAAAAAAATATTGATAACCCGCACAAAGATTTGCGCCGGGCGCG 596
|||||.|||||||||||.||.||||||||.||.|||||.||||||||..|
BPUM_2547___g 547 AATGATCAAAAAAATATCGACAACCCGCATAAGGATTTACGCCGGGCAAG 596
BSNT_04238___ 597 GGCTTGCGGTGAATCCATCATTCCAACAACAACAGGAGCGGCAAAGGCGC 646
.||.||.|...|.|||||.||||||||.||.||.||.||.||.||.||||
BPUM_2547___g 597 AGCATGTGCCCAGTCCATTATTCCAACTACGACGGGTGCTGCTAAAGCGC 646
BSNT_04238___ 647 TTTCGCTTGTGCTGCCGCATCTGAAAGGAAAACTTCACGGCCTCGC-CTT 695
||||..|.||||||||.||..|||||||.|||.|.||.||.||||| |||
BPUM_2547___g 647 TTTCTTTAGTGCTGCCACACATGAAAGGGAAATTACATGGACTCGCACTT 696
BSNT_04238___ 696 GCGTGTCCCTGTTCCGAACGTCTCATTGGTTGATCTCGTTGTTGATCTGA 745
|||||.||||||.|.||.||.||..||||||||||.|||||.||..|||
BPUM_2547___g 697 -CGTGTGCCTGTTTCCAATGTATCGATGGTTGATCTTGTTGTCGACTTGA 745
BSNT_04238___ 746 AAACGGATGTTACGGCTGAAGAAGTAAACGAGGCATT---TAAACGCGCT 792
|||..|||||.||.||.||||||||.||.|..||.|| ||| .||.
BPUM_2547___g 746 AAAAAGATGTCACAGCAGAAGAAGTCAATGCAGCCTTCTCTAA---TGCA 792
BSNT_04238___ 793 GCCAAAACGTCGATGTACGGTGTACTT-GATTACTCAGATGAACCGCTCG 841
.|.|||||.||..|.|.||||.| ||| ||||||.|.|||||.|||||.|
BPUM_2547___g 793 TCAAAAACTTCTTTATCCGGTAT-CTTAGATTACACGGATGAGCCGCTTG 841
BSNT_04238___ 842 TTTCGACTGATTATAATACGAATCCGCATTCAGCGGTCATTGACGGGCTT 891
||||.||.||.|.||||||.|||||..|||||||.|||.|.||.||.||.
BPUM_2547___g 842 TTTCTACAGACTTTAATACAAATCCTTATTCAGCTGTCGTAGATGGACTC 891
BSNT_04238___ 892 ACAACAATGGTAATGGAAGACAGGAAAGTAAAGGTGCTGGCGTGGTATGA 941
|||||.|||||.||||..||.||.||||||||.||.||.||.||||||||
BPUM_2547___g 892 ACAACGATGGTGATGGGGGATAGAAAAGTAAAAGTTCTTGCATGGTATGA 941
BSNT_04238___ 942 CAACGAATGGGGCTACTCCTGCAGAGTTGTTGATCT----AA--TCCGCC 985
|||.||||||||.||.||.||||||||.||.||||| || |
BPUM_2547___g 942 CAATGAATGGGGTTATTCATGCAGAGTAGTGGATCTTGTGAAGTT----- 986
BSNT_04238___ 986 ATGTAGCGGCACGAATGAAACATCCGTCTGCTGTATAA 1023
|||.|...|.|..||||||.|.|..||||||||.|.|
BPUM_2547___g 987 -TGTTGGATCGCAGATGAAAGAGCTTTCTGCTGTTTGA 1023
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