Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04248 and BPUM_2552
See
Amino acid alignment /
Visit
BSNT_04248 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:46
# Commandline: needle
# -asequence dna-align/BSNT_04248___phoR.1.24716.seq
# -bsequence dna-align/BPUM_2552___phoR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04248___phoR-BPUM_2552___phoR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04248___phoR-BPUM_2552___phoR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04248___phoR
# 2: BPUM_2552___phoR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1976
# Identity: 1131/1976 (57.2%)
# Similarity: 1131/1976 (57.2%)
# Gaps: 469/1976 (23.7%)
# Score: 2900.0
#
#
#=======================================
BSNT_04248___ 1 ATGAATAAA--TA----CCGTGTGCGCCTTTTTTCTGTATTCGTTGTCTG 44
||||.|||| || |||| ||.|||||.|.|.||
BPUM_2552___p 1 ATGAGTAAAATTAGAACCCGT------CTGTTTTCGGGACTC-------- 36
BSNT_04248___ 45 TATGATTCTGGTGTT--TTGTGTT-------CTCGGGCTGTTTTTACAGC 85
||..||||..|.|| ||||||| ||.||.||.||..||.|.|
BPUM_2552___p 37 -ATTTTTCTCCTTTTTATTGTGTTTGTGGCGCTTGGTCTTTTCCTAGATC 85
BSNT_04248___ 86 AGCTTTT------------TGAAACATCTGATCAAAGGAAAGCAGAGGAA 123
|..|.|| ||||||| |||..|..||||
BPUM_2552___p 86 ACATGTTCCATGTATTCTATGAAACA------------AAATTAACGGAA 123
BSNT_04248___ 124 CACATTGAAAAAGAAGCAAAATACTTGGCTTCGCTTCT------------ 161
|..||.|||||.|||.|.| |||| .||.||
BPUM_2552___p 124 CGAATGGAAAAGGAATCGA--------GCTT-TCTCCTATCTTCCATGAA 164
BSNT_04248___ 162 ---TGATGCCGGCAATCTGAATAATCAAGCAAATG---AGAAAATCATTA 205
||||| |||| |||.| ||.|||.| |
BPUM_2552___p 165 TGGTGATG------ATCT------------AAAGGCGAAGCAAAAC---A 193
BSNT_04248___ 206 AAGATG--------CAGGCGGCGC-GC---TTGATGTGAGCGCATCCGTT 243
||||.| |||||...|| || |||||.|||..||.||..||
BPUM_2552___p 194 AAGAGGTTCTCAATCAGGCAAAGCAGCATTTTGATATGAATGCGTCGATT 243
BSNT_04248___ 244 ATCGATACAGACGGTAAGGTGCTGTAT------------GGGTCAAACGG 281
.|.||| ||||.|.|...||| ||||||| |
BPUM_2552___p 244 GTGGAT-------GTAAAGGGGAATATCATACATACAACGGGTCAA---G 283
BSNT_04248___ 282 GAGATC----GGC--TGATTC----------------------------- 296
.|||.| ||| |.||||
BPUM_2552___p 284 CAGAACAAAAGGCCGTCATTCAAAACACACTGAACAATGAACGTCTCCAA 333
BSNT_04248___ 297 CCAAAAGG---------------TGCAG------GCGCTTGTTTCTGGCC 325
.||||||| || || |||| |||| ||
BPUM_2552___p 334 ACAAAAGGGGTCGTCATTGATGATG-AGAAAGACGCGC-TGTT-----CC 376
BSNT_04248___ 326 ATGAGGGTATTCTGTC----------AACAACA-GATAACAAGC------ 358
|| |||.||||| |||||.| | |||.|||
BPUM_2552___p 377 AT-----TATGCTGTCCCGATCTTAAAACAAAACG--AACCAGCGGGTTA 419
BSNT_04248___ 359 TTTATTACGGACTTTCACTTAGAAGCGAAGGTGAAAAAACAGGATATGTG 408
||||||.| ||| ||||| ..|||||.|
BPUM_2552___p 420 TTTATTTC-----TTC------AAGCG--------------TCATATGAG 444
BSNT_04248___ 409 CTGCTTTCCGCCTCTGAAA--AAAGCGACGGCTTAAAAGGCGAATTGTGG 456
| |||| ||| |||..||| |||.||.|.|
BPUM_2552___p 445 C--CTTT---------AAATGAAATTGAC---------GGCCAACTCT-- 472
BSNT_04248___ 457 GGGATG-CTGACGGCC---AGTCTTTGTACCGCATTTATCGTCATTGTTT 502
||..|| ||.| ||| .|||||.|..|.||..|||||.||||.|
BPUM_2552___p 473 GGCTTGCCTTA--GCCTTTTGTCTTGGCTCGGCGATTATCATCATCG--- 517
BSNT_04248___ 503 ATTTTTATTCCAGCATGACCTCACGT----------TATAAAAGGTCAAT 542
||||.|||..| .|||.||.|| |.||||| .||||
BPUM_2552___p 518 --TTTTCTTCGGG---TACCGCATGTCGATGAAATATGTAAAA--CCAAT 560
BSNT_04248___ 543 TGAGTCAGCGACAAATGTAGCCA------CAGAACTCTCTAAGGGCAACT 586
|||.|..||||||||.||||||| .|||||.| ||.||||
BPUM_2552___p 561 TGATTATGCGACAAAGGTAGCCAAACAGCTAGAACGC------GGGAACT 604
BSNT_04248___ 587 ACGATGCACGGA-CGTACGGCGGCTATATTAGGCGTTCTGATAAGCTAGG 635
|.||| |||.| |.| |||.|.|.| |||||.|.|.| .
BPUM_2552___p 605 ATGAT--ACGAATCAT----------TATGAAGAG--CTGATGATCGA-A 639
BSNT_04248___ 636 ACATGCGA--TGAACAGCCTTGCCATTGA----------------TCTGA 667
|||.|.|| ||||.| ||| ||| ||| |||..
BPUM_2552___p 640 ACAAGTGAACTGAATA-CCT--CCA-TGAAGCGTTTGGCAGGAAGTCTTC 685
BSNT_04248___ 668 TGGAAATGACGCGAACGCAG--GAAATGCAGCGGGATCGGCTGCTGACAG 715
..||||||| |.|..||.| |||||||||.|.||.||..|||..||||
BPUM_2552___p 686 AAGAAATGA--CTAGTGCCGGTGAAATGCAGAGAGACCGTTTGCAAACAG 733
BSNT_04248___ 716 TCATTGAAAACATTGGCTCCGGGCTGATTATGATCGACGGAAGA--GGCT 763
||||.|||||.|||||..|.|||.|.||..||||.|| .|||| ||.|
BPUM_2552___p 734 TCATAGAAAATATTGGAGCAGGGATTATATTGATTGA--TAAGATGGGGT 781
BSNT_04248___ 764 TTATTAATCTCGTAAACAGGT-----CTTACGCCAAGCAGTTTCATAT-C 807
..||..|.|||||.|| | |||.|| ||||||||||.|..| |
BPUM_2552___p 782 ACATCCACCTCGTCAA----TCGAACCTTCCG-CAAGCAGTTTAAGGTGC 826
BSNT_04248___ 808 AATCCGAATCATAT---GCTGCGCCGTCTTTATCACGATGCATTTGAACA 854
|| ||.||.|| ..|||.|...||.|||||.||.||.|||...||
BPUM_2552___p 827 AA----AAGCACATTTACATGCACAAGCTGTATCATGAAGCGTTTACCCA 872
BSNT_04248___ 855 TGAAGAAGTGATCCAGCTTGTCGAAGACATTTTTATGACGGAGACAAAGA 904
||||||..|.|||.|..|..|.||.||.|||||.|||||.||.||.|||
BPUM_2552___p 873 TGAAGAGATTATCGAATTAATTGACGAAATTTTCATGACAGAAACGAAG- 921
BSNT_04248___ 905 AATGC--AAGCTGTTAAGACTA-CCGATCAAAATAGAACGGCGTTATTTT 951
.||| |||.|.|||.|.||| ||| |..|.||.|||||.||.||.||.
BPUM_2552___p 922 -GTGCGGAAGTTTTTACGTCTAGCCG-TTGACATTGAACGTCGCTACTTC 969
BSNT_04248___ 952 GAAGTGGACGGTGTTCCGATTATGGGGCCGGACGATGAATGGAAAGGAAT 1001
.||||.||.|||||.||.|||.|..|..|.|||||.|||||||||||.||
BPUM_2552___p 970 CAAGTCGATGGTGTACCCATTTTAAGTACAGACGACGAATGGAAAGGCAT 1019
BSNT_04248___ 1002 TGTGCTTGTTTTCCATGACATGACGGAAACAAAGAAATTAGAGCAGATGA 1051
|||.|||||.||.||||||.|.||.|||||.|||.|..|.|||||||||.
BPUM_2552___p 1020 TGTCCTTGTGTTTCATGACGTCACAGAAACGAAGCAGCTCGAGCAGATGC 1069
BSNT_04248___ 1052 GGAAGGATTTTGTGGCCAATGTTTCTCATGAGCTGAAAACGCCGATTACG 1101
|.||.||.|||||.||||||||.|||||||||.|.|||||.|||||||||
BPUM_2552___p 1070 GAAAAGACTTTGTCGCCAATGTGTCTCATGAGTTAAAAACACCGATTACG 1119
BSNT_04248___ 1102 TCCATAAAAGGGTTTACGGAGA-CGTTATTGGACGGGGCGATGGAGGATA 1150
||.||.|||||.|||.|.||.| |.||.|| ||.||.|||||.||.||.|
BPUM_2552___p 1120 TCGATTAAAGGATTTTCTGAAACCCTTCTT-GATGGTGCGATTGATGACA 1168
BSNT_04248___ 1151 AAGAGGCGCTTTCTGAATTTCTCTCTATTATTCTTAAGGAAAGCGAAAGG 1200
||||.||.||..|.|||||.||.|||||.|||.|.||.||.||.|
BPUM_2552___p 1169 AAGAAGCACTGACAGAATTCCTTTCTATCATTTTAAAAGAGAGTG----- 1213
BSNT_04248___ 1201 CTTCAGTCT-------TTGGTTCAGGATTTGCTCGATCTCTCAAAAATCG 1243
||.|||| |||.||||.||.||.||.|||||.||.|||||.|
BPUM_2552___p 1214 --TCCGTCTAGAAACATTGATTCAAGACTTACTTGATCTTTCTAAAATTG 1261
BSNT_04248___ 1244 AGCAGCAAAATTTCACGCTCAGTATCGAAACGTTTGAGCCGGCCA----- 1288
|||||||..|.||||..||.|.|||..|| || .||||
BPUM_2552___p 1262 AGCAGCAGCAATTCAAACTGAATATTCAA------GA---AGCCAATGCA 1302
BSNT_04248___ 1289 ----AAATGCTTGTTGAGATTGAAACGCTTCTGAAGCATAAGGCGGATGA 1334
||||.||....||||||.||..|||..|.||.||.|||||....||
BPUM_2552___p 1303 ACAGAAATCCTCCAAGAGATTCAAGTGCTGTTAAATCAAAAGGCTACAGA 1352
BSNT_04248___ 1335 GAAAGGCATCTC-CTTGCACCTGAATGTCCCGAAAGACCC--TCAATATG 1381
.|||||||| || .||.|||.||..||||||.|||||.|| || ||||
BPUM_2552___p 1353 AAAAGGCAT-TCAATTACACGTGCGTGTCCCAAAAGAACCGGTC--TATG 1399
BSNT_04248___ 1382 TATC-TGG-TGACCCG-TACAGGCTGAAACAGGTATTTCTTAATCTCGTA 1428
|| ||| .|||||| || |||.|.||.||..|.||.||.||||||||.
BPUM_2552___p 1400 --TCATGGCAGACCCGCTA-AGGTTAAAGCAAATTTTCCTCAATCTCGTT 1446
BSNT_04248___ 1429 AACAATGCGTTAACCTACACGCCTGAGGGGGGCTCCGTGGCTATCA--AT 1476
||.|||||..|.|||||.||.||.|||||.|| ..||| ||| ||
BPUM_2552___p 1447 AATAATGCCCTTACCTATACACCAGAGGGAGG--AAGTG----TCACCAT 1490
BSNT_04248___ 1477 GT---AAAGCCCAGAGAAAA--AGACATTCAGATTGAGGTTGCCGATTCT 1521
.| .|||.|| |.||||| .|.|..|.|..||||.||.||.||..|.
BPUM_2552___p 1491 CTCAGCAAGACC-GCGAAAAGGTGCCTATGAATTTGATGTAGCAGACACA 1539
BSNT_04248___ 1522 GGAATCGGAATTCAGAAAGAAGAAATTCCGCGCATCTTTGAACGCTTTTA 1571
||.|||||.||..|||||...||.|||||..|.||.|||||..|.|||||
BPUM_2552___p 1540 GGGATCGGGATGAAGAAAAGTGAGATTCCAAGAATATTTGAGAGATTTTA 1589
BSNT_04248___ 1572 CCGCGTAGATAAAGACAGAAGCAGGAATTCGGGCGGAACTGGGCTGGGCC 1621
.||..|.||||||||.||||||||.|||||.|||||.||.||.||.||.|
BPUM_2552___p 1590 TCGAATTGATAAAGATAGAAGCAGAAATTCAGGCGGTACAGGTCTTGGTC 1639
BSNT_04248___ 1622 TTGCGATTGTCAAGCATTTAATAGAGGCTCATGAAGGGAA-AATTGATGT 1670
||||.||||||||.||..|..|.|||||.|||| |||||| .|||..|||
BPUM_2552___p 1640 TTGCCATTGTCAAACACCTTGTGGAGGCGCATG-AGGGAACCATTTCTGT 1688
BSNT_04248___ 1671 ---CA-CAAGCGAGCCTGGACGGGGA--ACTGTCTTTACCGTGACGCTGA 1714
|| |||.|.|| |||..||.| ||| |||||.|||| |||
BPUM_2552___p 1689 TCGCAGCAAACAAG---GGAAAGGAACGACT---TTTACAGTGA-GCT-- 1729
BSNT_04248___ 1715 AACGGGCCGCTGAAAAGTCCGCCTAA 1740
||||| ||..|.||.
BPUM_2552___p 1730 ----------TGAAA--TCGACATAG 1743
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.