Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04299 and BPUM_2585
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:50
# Commandline: needle
# -asequence dna-align/BSNT_04299___sppA.1.24716.seq
# -bsequence dna-align/BPUM_2585___sppA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04299___sppA-BPUM_2585___sppA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04299___sppA-BPUM_2585___sppA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04299___sppA
# 2: BPUM_2585___sppA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1070
# Identity: 710/1070 (66.4%)
# Similarity: 710/1070 (66.4%)
# Gaps: 130/1070 (12.1%)
# Score: 2213.5
#
#
#=======================================
BSNT_04299___ 1 ATGAATGCAAAAAGATGGATTGCATTAGTGATTGCTCTGGGGATTTTCGG 50
||||||||.|||||||||.|.||.|||.|.|||||.||.||..|||||||
BPUM_2585___s 1 ATGAATGCGAAAAGATGGGTAGCGTTAATCATTGCACTTGGAGTTTTCGG 50
BSNT_04299___ 51 CGTGTCTATTATCGTCAGCATCTCTATGAGTTTCTTTGAAAGCGTCAAAG 100
..|.||.|||.|..|.||..||.|.|.|..|||.|.|||||||.||||.|
BPUM_2585___s 51 ATTTTCAATTGTGATTAGTGTCACGACGGCTTTGTATGAAAGCTTCAATG 100
BSNT_04299___ 101 GCGCTCAAACGGATCTCACATCACT---GACGGATG-AATCGCAGGAAA- 145
.|..| |||..||.|| ||||.| | ||||| |||.|.||.|||
BPUM_2585___s 101 ACAAT-AAAATGAGCT---ATCAATTTGG--GGATGAAATAGAAGAAAAG 144
BSNT_04299___ 146 -----AGACGCTGGAAAACGGCAGT-CTCTCAAGTAAAATTGCCGTATTA 189
|||.|.||||| ||.|| || .|.||||||||.||..|.
BPUM_2585___s 145 GTACTAGAGGATGGAA----GCGGTGCT----GGAAAAATTGCGGTTCTT 186
BSNT_04299___ 190 GAGGTCAGCGGCACCATTCAGGATAATGG----GGACTCAAGCAGTCTGC 235
|||.|.|..||.||||||||.|||||||| |.| ||| |||||..
BPUM_2585___s 187 GAGATTAATGGAACCATTCAAGATAATGGCGGTGCA-TCA---AGTCTAT 232
BSNT_04299___ 236 TTGGTGCAGACGGATATAACCA-----CA---------GAACGTTCTTAA 271
|.||.|.|||.||.|||.|.|| || |||| ||.
BPUM_2585___s 233 TAGGCGGAGAAGGTTATGATCATCGTGCATTTCTGAAGGAAC-----TAG 277
BSNT_04299___ 272 AAAACCTTGAGCGCGCAAAAGATGA-----CAAGACGGTCAAAGGTATCG 316
|||| |||| |||||||| || ||.||||| ||
BPUM_2585___s 278 AAAA-----AGCG----AAAGATGATGCTTCA-----GTAAAAGG---CG 310
BSNT_04299___ 317 TTCTGAAG---GTGAATTCTCCGGGTGGCGGAGTGTATGAAAGTGCTGAA 363
|.|||..| ||.||.|||||.||.|||||.||.|||||||||||.|||
BPUM_2585___s 311 TACTGCTGCGCGTCAACTCTCCAGGCGGCGGTGTCTATGAAAGTGCAGAA 360
BSNT_04299___ 364 ATACATAAGAAACTGGAAGAAATCAAGAAAGAAACGAAAAAACCGATTTA 413
||||||||.|||.|.||||||.| ||||.||.||||.||.||||||||
BPUM_2585___s 361 ATACATAAAAAATTAGAAGAAGT---GAAAAAAGCGAAGAAGCCGATTTA 407
BSNT_04299___ 414 CGTGTCAATGGGTTCGATGGCAGCATCAGGAGGCTATTACATCTCAGCAG 463
|||.||.|||||.||.||||||||.||.||.|||||.||..|.|||.|..
BPUM_2585___s 408 CGTTTCTATGGGCTCTATGGCAGCGTCTGGTGGCTACTATGTATCAACTC 457
BSNT_04299___ 464 CGGCTGATAAGATTTTTGCGACACCGGAAACCCTGACCGGGTCACTCGGC 513
|.||..|.||.||.|||||..||||.|||||..|.||.||.||..|.||.
BPUM_2585___s 458 CAGCCAAGAAAATCTTTGCTTCACCTGAAACATTAACAGGATCTTTAGGT 507
BSNT_04299___ 514 GTCATTATGGAAAGCGTCAATTATTCAAAACTTGCCGATAAGCTTGGCAT 563
||.||.|||.|||||.|.||.||||||||.||.||.|||||..|.||.||
BPUM_2585___s 508 GTGATCATGCAAAGCTTGAACTATTCAAAGCTGGCAGATAATTTAGGGAT 557
BSNT_04299___ 564 TTCTTTTGAAACGATTAAGAGCGGGGCCCA-----TAAGGACATTATGTC 608
|...|..|||||.|||||.||||| | .||.|||||.|||||
BPUM_2585___s 558 TAAATACGAAACAATTAAAAGCGG-----AAAATTCAAAGACATCATGTC 602
BSNT_04299___ 609 TCCTTCCCGTGAGATGACGAAAGAAGAAAAAAACATCATGCAATCGATGG 658
.||....|||||.|||||||||||.||.....||||.||||||...||||
BPUM_2585___s 603 GCCAAATCGTGATATGACGAAAGATGAGCGCGACATTATGCAAAGCATGG 652
BSNT_04299___ 659 TTGATAATTCGTATGAAGGCTTTGTTGATGTCATTTCAAAAGGGCGCAGC 708
|.|||||.|||||||||||.|||||..|.||.||.||..||||||||.||
BPUM_2585___s 653 TCGATAACTCGTATGAAGGATTTGTCAAAGTGATCTCTGAAGGGCGCGGC 702
BSNT_04299___ 709 ATGTCGAAAGCAGAGGTAAAGAAAATTGCGGACGGCCGCGTGTATGACGG 758
|||||.|||..|||.||.||||||||||||||||||||.||.||||||||
BPUM_2585___s 703 ATGTCAAAACAAGATGTGAAGAAAATTGCGGACGGCCGGGTTTATGACGG 752
BSNT_04299___ 759 ACGGCAGGCGAAA--AAACTGAACCTCGTTGATGAGCTTGGTTTTTATGA 806
|...||||||||| .|||.|| .|.||.|||||||||||||.||||||
BPUM_2585___s 753 AACACAGGCGAAATCGAACGGA--TTAGTCGATGAGCTTGGTTATTATGA 800
BSNT_04299___ 807 CGATACCATTACGGCCAT---GAAAAAGGATCACAAGGATTTGAAAAA-- 851
.|||.|.||.|..||.|| ||||||.|| |.||||.|| ||||
BPUM_2585___s 801 AGATGCAATCAAAGCGATGAAGAAAAATGA--AAAAGGGTT---AAAAGG 845
BSNT_04299___ 852 --CGCCTCTG-TCATTTCTTATGAGGAAAGCTTCGGATTAGG--CTCACT 896
||.|..|| |||..|.||.| .|||||||.||.| || |||.||
BPUM_2585___s 846 AGCGACAGTGATCAGCTATTCT---CAAAGCTTTGGCT--GGAACTCTCT 890
BSNT_04299___ 897 GTTTTCCATGGGCGCGAACAAAATGTTTAAAAGTGAAATTGATTTTTTGA 946
.||....|||.||||.|.||||.|.|||||||||||||||||||||.|.|
BPUM_2585___s 891 CTTCAATATGAGCGCAAGCAAACTCTTTAAAAGTGAAATTGATTTTCTCA 940
BSNT_04299___ 947 ATATGAGAGAAATTCTATCGCAAT--CCGGTTC------GCCGAGAATGA 988
||.|.|.||||| ||.| |.||.|| |.|.|.|..||
BPUM_2585___s 941 ATCTAAAAGAAA--------CACTGGCTGGCTCAAATGGGTCTAAACCGA 982
BSNT_04299___ 989 TGTATCTCTATGCGAAGTAG 1008
|||||||||||.|.||.||.
BPUM_2585___s 983 TGTATCTCTATTCAAAATAA 1002
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