Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04427 and BPUM_2594
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:59
# Commandline: needle
# -asequence dna-align/BSNT_04427___ytsC.1.24716.seq
# -bsequence dna-align/BPUM_2594___ytsC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04427___ytsC-BPUM_2594___ytsC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04427___ytsC-BPUM_2594___ytsC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04427___ytsC
# 2: BPUM_2594___ytsC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 779
# Identity: 566/779 (72.7%)
# Similarity: 566/779 (72.7%)
# Gaps: 34/779 ( 4.4%)
# Score: 1973.5
#
#
#=======================================
BSNT_04427___ 1 ATGGTGATTTTAGAAGCGAATAAAATTCGAAAAAGTTATGGAAACAAGCT 50
|||...|||||||||||....|||||....|||||.||.||.||.||..|
BPUM_2594___y 1 ATGAACATTTTAGAAGCTCGCAAAATATATAAAAGCTACGGCAATAAATT 50
BSNT_04427___ 51 GAATAAACAGGAAGTGCTGAAGGGCATCGATATTCAC-ATTGAAAAGGGC 99
.||.|||||.||.|||||||..|||||.|| .||.|| ||||||...||.
BPUM_2594___y 51 CAACAAACAAGAGGTGCTGAGTGGCATTGA-CTTGACGATTGAAGCTGGA 99
BSNT_04427___ 100 GAATTCGTCAGTATTATGGGGGCTTCCGGGTCGGGAAAAACCACTTTGCT 149
|||||||||||.||.|||||..|.||.||.||.||.|||||.||..|.||
BPUM_2594___y 100 GAATTCGTCAGCATCATGGGTCCATCAGGCTCAGGGAAAACAACCCTTCT 149
BSNT_04427___ 150 CAACGTTCTGTCCTCAATCGATCAGGT---CAGTCACGGAACCATTCATA 196
.|||||..|||||||.||.|||||.|| ||| ||||.||||||.||
BPUM_2594___y 150 GAACGTATTGTCCTCTATTGATCATGTGTCCAG---CGGATCCATTCGTA 196
BSNT_04427___ 197 T---TAATG--GAAATGACATGACGGCTATGAAGGAAAAGCAGCTGGCTG 241
| ..||| ||.||||||..| ||||||||..|||||||.||.|
BPUM_2594___y 197 TCGCAGATGCTGAGATGACACAA-----ATGAAGGATCAGCAGCTTGCAG 241
BSNT_04427___ 242 AATTTAGAAAACAGCATTTAGGCTTTATCTTTCAGGATTACAATTTGTTA 291
||||.||||||.||||..|.||||||.|.|||||||||||.||.||..|.
BPUM_2594___y 242 AATTCAGAAAAAAGCAGCTTGGCTTTGTTTTTCAGGATTATAACTTACTT 291
BSNT_04427___ 292 GACACATTGACAGTGAAAGAGAATATCCTTCTGCCTTTATCGATCACGAA 341
||.|||.|.|||||.||||||||.|||||..||||.||.||.|||.|.||
BPUM_2594___y 292 GATACACTCACAGTCAAAGAGAACATCCTCTTGCCATTGTCCATCTCCAA 341
BSNT_04427___ 342 ACTATCAAAAAAGGAAGCCAATCGCAAG-TTTGAGGAAGTTGCAAAGGAA 390
|....||||.||.|||| |..|||.|.| |||.|..|..||||..||||.
BPUM_2594___y 342 AACGCCAAAGAAAGAAG-CTTTCGAACGTTTTCAACAGCTTGCGGAGGAC 390
BSNT_04427___ 391 CTGGGAATATATGAATTGCGGGATAAGTACCCGAATGAAATTTCCGGCGG 440
.||||.||.||||||.|..|.||.||.||.||||||||..|.||.||.||
BPUM_2594___y 391 ATGGGCATTTATGAACTAAGAGACAAATATCCGAATGAGCTCTCTGGTGG 440
BSNT_04427___ 441 CCAGAAGCAGAGAACATCCGCTGGAAGAGCGTTTATTCATGACCCGAGCA 490
.||.||.||..|.|||||.||.|.|.|.||.||.||||||||.|||||..
BPUM_2594___y 441 ACAAAAACAACGGACATCAGCGGTACGTGCCTTCATTCATGAACCGAGTC 490
BSNT_04427___ 491 TTATTTTCGCTGATGAACCGACCGGCGCGCTCGATTCGAAATCGGCCTCC 540
||||||||||.||||||||.|||||.|||||.|||||.|||||.|||||.
BPUM_2594___y 491 TTATTTTCGCGGATGAACCTACCGGAGCGCTTGATTCCAAATCTGCCTCT 540
BSNT_04427___ 541 GATCTATTAAATAAGCTGAGCCAG---CTCAATCAAAAACGCAACGCGAC 587
|||.||.|.||||||||| ||| .||||||..|||||.||.|||||
BPUM_2594___y 541 GATTTACTCAATAAGCTG---CAGGATTTCAATCGTAAACGAAAAGCGAC 587
BSNT_04427___ 588 GATTATTATGGTTACCCATGATCCCGTCGCTGCCAGCTACTGCGGCA--- 634
.|||.|.|||||.||.||||||||.|||||.||||||||.| ||
BPUM_2594___y 588 CATTGTCATGGTGACACATGATCCTGTCGCAGCCAGCTATT----CAAGA 633
BSNT_04427___ 635 -GAGTCATTTTTATTAAGGACGGGCAAATGTATACACAGCTGAATAAAGG 683
|.|||||||||||.||||||||.|||||.|||||.||||||||||||||
BPUM_2594___y 634 CGCGTCATTTTTATCAAGGACGGACAAATCTATACTCAGCTGAATAAAGG 683
BSNT_04427___ 684 GGGCCAGGACAGGCAAACGTTTTTCCAGGATATTATGAAAACGCAAGGCG 733
.|.....||.||..|.|.|||||||.||||||||||||||||.|||||.|
BPUM_2594___y 684 TGCTTTAGAGAGAAAGATGTTTTTCGAGGATATTATGAAAACACAAGGTG 733
BSNT_04427___ 734 TGTTAGGCGGGGTGCAGCATGAACATTAA 762
|.|||||.||.|||.||||||||||||||
BPUM_2594___y 734 TTTTAGGTGGTGTGAAGCATGAACATTAA 762
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