Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04463 and BPUM_2704

See Amino acid alignment / Visit BSNT_04463 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:01
# Commandline: needle
#    -asequence dna-align/BSNT_04463___ytkA.1.24716.seq
#    -bsequence dna-align/BPUM_2704___ytkA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04463___ytkA-BPUM_2704___ytkA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04463___ytkA-BPUM_2704___ytkA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04463___ytkA
# 2: BPUM_2704___ytkA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 492
# Identity:     293/492 (59.6%)
# Similarity:   293/492 (59.6%)
# Gaps:         111/492 (22.6%)
# Score: 783.5
# 
#
#=======================================

BSNT_04463___      1 ATGAAAAAGATGTTGG------TTGTTCTGCTTTTTTCTGCTTTTTTGCT     44
                     |||..|||.|||||||      |.||..||||         |||.||.||
BPUM_2704___y      1 ATGCGAAAAATGTTGGGAATGATAGTGTTGCT---------TTTGTTACT     41

BSNT_04463___     45 TAATGGATGCGG---ATCTGGTGAAAGCAAA-----GCAAATACAGCTGA     86
                     .|.||.|||.||   .||||    .||||||     ||||    ||..||
BPUM_2704___y     42 AAGTGCATGTGGGAACTCTG----CAGCAAATAGTGGCAA----AGGGGA     83

BSNT_04463___     87 GACGCCCGAGGTTTTGGATGTCAAGCTGACCGGGCCTGAAAAAGT-----    131
                     |..|||.||..|.||.||.||.|||||.||.||.||||||.||||     
BPUM_2704___y     84 GGTGCCTGAACTATTAGAAGTGAAGCTTACAGGACCTGAACAAGTGGAGA    133

BSNT_04463___    132 -AAATCCCGGAGAAAGCGCTGCTTAT----GAAGCAGCCGTATCATATGG    176
                      ||||      |||||||    ||||    .|||||||.||..|||||||
BPUM_2704___y    134 AAAAT------GAAAGCG----TTATAGTAAAAGCAGCTGTCACATATGG    173

BSNT_04463___    177 TGATGAAG-CTG-TGACGGATGCCGATGAAGTAGAGTTTGAAGTATGGAA    224
                     |||| |.| ||| ||| .||.||.||.||.||..|.||||||||.|||||
BPUM_2704___y    174 TGAT-ACGCCTGTTGA-TGACGCAGACGATGTTCAATTTGAAGTGTGGAA    221

BSNT_04463___    225 AGAAGGGGAAAAAGA----CGCAAGCCAAATGTTTAAGGC---GAAACAA    267
                     |||.||.||.||.||    .|||||    |||.||.||.|   |||| .|
BPUM_2704___y    222 AGATGGCGATAAGGATAACAGCAAG----ATGATTCAGCCAAAGAAA-GA    266

BSNT_04463___    268 GAA-AAAGGCGTATACCGATTGGAAACGACGTTTAAGGAAGATGG--TGT    314
                     ||| |||||.|||||...|||..|.||..|.|||||..|||||||  |.|
BPUM_2704___y    267 GAACAAAGGTGTATATGAATTACATACAGCCTTTAAAAAAGATGGCCTTT    316

BSNT_04463___    315 ATA-CACTGTCCAA-TCTCATGTCACAGCAAAAAAACAGCATAGCATGCC    362
                     ||| ||   |.||| || |||||.|||||.|||.|.|||||||..|||||
BPUM_2704___y    317 ATATCA---TACAAGTC-CATGTGACAGCTAAACAGCAGCATAATATGCC    362

BSNT_04463___    363 GACCTTAAAAG-------TCCAAGTCGGAGACGCCGATGCTGCCAGCAAT    405
                            ||||       ||||.||.||         ||.||..|..||.
BPUM_2704___y    363 -------AAAGACGAACATCCATGTAGG---------TGATGTGAAAAAA    396

BSNT_04463___    406 CAG---TCA------GAAGAGGAGCATTCACATCATCATTGA    438
                     .||   |||      |||||.||....|||||||||.|.   
BPUM_2704___y    397 GAGAATTCATCTACTGAAGAAGAAACCTCACATCATTAA---    435


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.