Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04483 and BPUM_2717
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:03
# Commandline: needle
# -asequence dna-align/BSNT_04483___ytxM.1.24716.seq
# -bsequence dna-align/BPUM_2717___ytxM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04483___ytxM-BPUM_2717___ytxM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04483___ytxM-BPUM_2717___ytxM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04483___ytxM
# 2: BPUM_2717___ytxM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 941
# Identity: 530/941 (56.3%)
# Similarity: 530/941 (56.3%)
# Gaps: 232/941 (24.7%)
# Score: 1239.0
#
#
#=======================================
BSNT_04483___ 1 ATGGGAACTGTAAACATAACG----GTATCAGATGGTATCCGATATGCAG 46
|||....||.|.|..||||.| || |||||| |
BPUM_2717___y 1 ATGTCTTCTTTCATAATAAGGATGCGT----GATGGT------------G 34
BSNT_04483___ 47 TGGCAGACGAGG-----GA-CCGAATGCTTCCG------AAGCCGTCG-T 83
||||..|||||| || |.||||.|.||.| |.||| .|| |
BPUM_2717___y 35 TGGCGTACGAGGTGATAGATCAGAATCCATCAGGTGAGAATGCC-ACGCT 83
BSNT_04483___ 84 CTGTCTGCACGGGTTTACCG-----GCAGCAAACAATCATGG-ACTTTTC 127
.||..|.|||||.|||||.| ||.|| .||.||| ||||||
BPUM_2717___y 84 ATGCTTACACGGTTTTACTGGAAGTGCGGC-----TTCTTGGAACTTTT- 127
BSNT_04483___ 128 TTGATGAGATGC-TGTCTG----ATTCACGTTTGA-TCAAAATTGATTGT 171
||| |||| |.|.|| ||.||.|.|||| |||||...|.|||.
BPUM_2717___y 128 ----TGA-ATGCTTATATGGAAAATACAAGATTGATTCAAATCAGTTTGC 172
BSNT_04483___ 172 TTAGGGCATGGGGAAACCGATGCCCCGCTGAATGG--------GAA---- 209
|| ||.||||| |||| |.|| |||
BPUM_2717___y 173 TT-GGACATGG-------------CCGC---ACGGACTCACCAGAAAGTA 205
BSNT_04483___ 210 ----AAGATA--------CAGCA-CAAGCCGGCAAGTTTCTGACCTTGCC 246
|||||| | ||| ||| |.|||| ||.|||||.
BPUM_2717___y 206 TAAGAAGATATGCGATGTC-GCATCAA-CTGGCA-------GATCTTGCA 246
BSNT_04483___ 247 GAGATTTTGAATCAATTAAAACTTCACAAAGTGAA-ATTGATTGGGTATT 295
||||||||.||.||||||||.|||||||||||||| ||| .|.||.||||
BPUM_2717___y 247 GAGATTTTAAACCAATTAAAGCTTCACAAAGTGAATATT-CTCGGATATT 295
BSNT_04483___ 296 CTATGGGAGGAAGGCTTGCTTACTCTTTTGCGATGAC-----ATATCCCG 340
|||||||||||.|..||||||..||.||||| | .|||.|.|
BPUM_2717___y 296 CTATGGGAGGACGTATTGCTTTATCATTTGC-----CTCTCGTTATTCAG 340
BSNT_04483___ 341 AGCGGGTATCGGCACTTGTGCTT---GAAAGCACGACGCCGGGGCT---C 384
||||.| ||..||..| ||.|| ||.||.||..|.||.||||| |
BPUM_2717___y 341 AGCGAG--TCAACAAGT-TGATTTTAGAGAGTACCTCTCCAGGGCTTCGC 387
BSNT_04483___ 385 A-----AAACACTTGGGGAACGGCGGGAACGAATTATGCGGGACCGGAAG 429
| ||| ||.|||..||.|.||.|.|..|..||.|...||
BPUM_2717___y 388 ACGTTTAAA--------GAGCGGATGGCAAGACTCAAACATGATCATCAG 429
BSNT_04483___ 430 CTTGCTGATTTTATTTTAAGAGACG--GGCTCA---AAGCGTTTGTTGCG 474
||.|||.| .|...|.|||||.| ||.|.| || ||||||.|..
BPUM_2717___y 430 CTCGCTCA---GAAAATGAGAGATGAAGGTTTAGTGAA--GTTTGTGGAT 474
BSNT_04483___ 475 TATTGGGAGAATATCCC----TTTG--------------TTTTCATCTCA 506
|.||||||||.|||||| |||| ||.|||.||||
BPUM_2717___y 475 TTTTGGGAGAGTATCCCACTATTTGCTTCGCAAAAAACTTTATCAGCTCA 524
BSNT_04483___ 507 -GCAGAGGCTGGCTGAAGATATTCGGCACAGGATACGATCGGGCCGTCTG 555
|| ||.||||.|| .||.||..|||..| |
BPUM_2717___y 525 TGC----GCAGGCTCAA---------------CTAAGAAAGGGAAG---G 552
BSNT_04483___ 556 CGGAA---CAATAAGATCGGGCTTGCGAACAGTTTAACCGGCATGGGCAC 602
|.||| |||...|.|.||.||.||...|||.|||...|||||.||.||
BPUM_2717___y 553 CTGAAAGCCAACCCGCTTGGACTAGCTCGCAGCTTAGAAGGCATAGGAAC 602
BSNT_04483___ 603 CGGTTCACAGCCTTCCTTCTGG-AGCCGTGTAGAGGAAATAGATGTTCCT 651
.||.||.|||||.||..|.||| ||.|.| ||.||.|..||.||.|.|||
BPUM_2717___y 603 AGGATCGCAGCCCTCTGTTTGGAAGGCAT-TAAAGCATTTAAATTTACCT 651
BSNT_04483___ 652 GTGCTTCTGATCTGCGGGGAGTGGGACGAAAAATTTTG------CGCCAT 695
||..|..||||.||.||.|.|...||.||.||.||||| |||||
BPUM_2717___y 652 GTTTTGTTGATTTGTGGAGCGCTTGATGAGAAGTTTTGCAATATCGCCA- 700
BSNT_04483___ 696 CA---AT-CAAGAGGTGCAT-AAGATGCTTCCTTCTAGTAGAATAGAGAT 740
|| || ||..|||.||.| ||| || ||| .|||.||
BPUM_2717___y 701 CACGTATGCAGCAGGAGCTTGAAG--GC--------AGT-CAATTGA--- 736
BSNT_04483___ 741 TGTTCCAAAAGCA----GGACATACGGTCCATGTGGAACAGCCGCGATTG 786
||||.....|||| ||.|||||.||.|||||||||||.||.|..||.
BPUM_2717___y 737 TGTTGGCTGAGCAGGCTGGGCATACAGTTCATGTGGAACAACCACATTTT 786
BSNT_04483___ 787 TTTGGTAAAATAGTGAGTGAGTTTTTGA--CAAGCATCTGA 825
||||||||||||||.|||||||||.|.| |||| ||..|
BPUM_2717___y 787 TTTGGTAAAATAGTTAGTGAGTTTATTACCCAAG-ATTAG- 825
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