Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04485 and BPUM_2718

See Amino acid alignment / Visit BSNT_04485 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:03
# Commandline: needle
#    -asequence dna-align/BSNT_04485___menD.1.24716.seq
#    -bsequence dna-align/BPUM_2718___menD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04485___menD-BPUM_2718___menD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04485___menD-BPUM_2718___menD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04485___menD
# 2: BPUM_2718___menD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1931
# Identity:    1177/1931 (61.0%)
# Similarity:  1177/1931 (61.0%)
# Gaps:         379/1931 (19.6%)
# Score: 3294.5
# 
#
#=======================================

BSNT_04485___      1 TTG-ACAGTCAACCCGATTACT-----CATTACATCGGAAGTTTTATTGA     44
                     ||| |.|.|||    ||||| |     || ||.||.||.||.||.||.||
BPUM_2718___m      1 TTGAATAATCA----GATTA-TGACAACA-TATATTGGCAGATTGATGGA     44

BSNT_04485___     45 TGAATTCGCCCTTTCCGGAA------TTAC-GGACGCCGTCGTTTGTCCG     87
                     ||||||.|.||       ||      .||| .||.||.||.||.|||||.
BPUM_2718___m     45 TGAATTTGTCC-------AAGGTGGCGTACAAGAGGCAGTTGTCTGTCCA     87

BSNT_04485___     88 GGCTCAAGATCTACACCGCTGGC--TGTT--CTTTGTGCTGCGCATCCCG    133
                     ||.||..|.||.||.|||||.||  ||||  ||.|    |||.||.|..|
BPUM_2718___m     88 GGTTCTCGTTCAACCCCGCTTGCAATGTTGGCTCT----TGCCCACCAAG    133

BSNT_04485___    134 ATATCAGCGTCCATGTCCAAATT----GATGAAAGATCTGCCGGGTTTTT    179
                     |.||||..||||||||    |||    ||||||||.|||||.|..||||.
BPUM_2718___m    134 ACATCAATGTCCATGT----ATTAGTGGATGAAAGGTCTGCTGCTTTTTA    179

BSNT_04485___    180 TGCCTTAGGTTTGGCAAAAGCGAAG-CAGCGTCCCGTACTATTGATCTGT    228
                     |||..|||||.|.||.||||| ||| ||....||.||.||..|.||.|||
BPUM_2718___m    180 TGCGCTAGGTCTCGCGAAAGC-AAGTCAAACCCCAGTGCTGCTTATTTGT    228

BSNT_04485___    229 ACATCTGGAACAGCCGCGGCTAACTTTTATCCGGCTGTGGTTGAAGCCCA    278
                     |||||.||.|||||.||.||||||||||||||.||..|.||.||.||.||
BPUM_2718___m    229 ACATCAGGTACAGCAGCTGCTAACTTTTATCCAGCCATTGTAGAGGCACA    278

BSNT_04485___    279 TTATTCAAGGGTGCCTATTATTGTGTTAACTGCTGATCGGCCTCATGAGC    328
                     ||||||..|.||.||..|||||||.|||||||||||||||||.||.||..
BPUM_2718___m    279 TTATTCCCGTGTCCCACTTATTGTTTTAACTGCTGATCGGCCGCACGAAT    328

BSNT_04485___    329 TGCGCGAAGTAGGCGCACCGCAGGCTATTAATCAGCACTTCTTATTCGGT    378
                     ||.|.|||||.||.|||||.||.||.|||.|||||||.||||||||||||
BPUM_2718___m    329 TGAGGGAAGTTGGAGCACCTCAAGCGATTGATCAGCAATTCTTATTCGGT    378

BSNT_04485___    379 AACTTTGTTAAGTTTTTCACAGACTCTGCTCTTCCTGAAG--AGTCTCCG    426
                     ||.||||||||.|..||||||||||..||..|.||.||||  ||||    
BPUM_2718___m    379 AAGTTTGTTAAATGGTTCACAGACTTAGCATTGCCAGAAGAAAGTC----    424

BSNT_04485___    427 CAAATGCTGAGATACATCCGA----ACGCT-------GGCAAGCCGCGCT    465
                              ||||      ||    |||||       |.| |||.|||  
BPUM_2718___m    425 ---------AGAT------GATGTTACGCTATGTTCAGAC-AGCGGCG--    456

BSNT_04485___    466 GCCGGAG--AAGCACA--------AAAGCGCCCAATGGGGCCTGTCCATG    505
                     ||..|||  ||.||.|        .|||.|||.|| |||.|||||.||..
BPUM_2718___m    457 GCAAGAGCAAATCATATGTCGATGCAAGAGCCGAA-GGGACCTGTACAAA    505

BSNT_04485___    506 TGAATGTGCCGCTGCGCGAACCGCTGATGCCGGATCTTTCAGATGAGCCG    555
                     |.|||||.||.|||.|.|||||..||.|.||.|||.|.||...|.|.|| 
BPUM_2718___m    506 TCAATGTCCCTCTGAGAGAACCATTGCTTCCTGATTTGTCTATTCATCC-    554

BSNT_04485___    556 TTTGGA---AGAATGAGAACAGGCCGTCATGTATCTGTGAAAACGGGTA-    601
                     |||.||   |||| || |||||.||             |||||..|||| 
BPUM_2718___m    555 TTTCGACAGAGAA-GA-AACAGACC-------------GAAAAAAGGTAT    589

BSNT_04485___    602 ---------CGCAGTC---------TGTTGACCGCGAGTCCCTGTCTGA-    632
                              ..|||.|         ||.||| .|||     ||.||||| 
BPUM_2718___m    590 TAGCTACAGGACAGGCTTACCCAAATGATGA-TGCG-----CTATCTGAA    633

BSNT_04485___    633 --TGTGGC-----TGAGATGCTCGCAGAGGCTGAAAAAGGAATGATCGTC    675
                       ||||.|     |||...|.|| ||       ||||.|||.||||.||.
BPUM_2718___m    634 ATTGTGACGGTCATGAACCGTTC-CA-------AAAAGGGACTGATTGTG    675

BSNT_04485___    676 TGCGGAGAGCTCCATAGTGATGTGGATAAGGAAAA----CATTATTACG-    720
                     ||.||||||||.||||.|.|    || |||.||||    ||.|.||||| 
BPUM_2718___m    676 TGTGGAGAGCTTCATACTCA----GA-AAGAAAAAGAGGCAGTGTTACGT    720

BSNT_04485___    721 CTGTCAAAAGCGCTT-CAGTATCCAATTTTAGCGGATCCGCTGTCTAATC    769
                     ||.||||||| .||| ||...|||||||||||||||.||.||.|||.||.
BPUM_2718___m    721 CTTTCAAAAG-ACTTGCATCTTCCAATTTTAGCGGACCCACTTTCTCATT    769

BSNT_04485___    770 TGCGGAATGGTGTTCATGATAAAAGCACTG---------TTATTGATGCG    810
                     ||||.|||||   |||||     |||| ||         |.|||||||||
BPUM_2718___m    770 TGCGAAATGG---TCATG-----AGCA-TGCAGAGCTTATAATTGATGCG    810

BSNT_04485___    811 TATGATTCGTTTTTAAAAGATGATAAGC--TGAAGCGGAAAC-----TTC    853
                     ||||||||.||.||||||||||  ||||  ||.|||   |||     || 
BPUM_2718___m    811 TATGATTCTTTATTAAAAGATG--AAGCATTGCAGC---AACACCTATT-    854

BSNT_04485___    854 GTCCTGATGTTGTCATTCGGTTTGGACCGATGCCTGTTTCAAAACCGGTT    903
                      .||.|||.|.||.|||||.|||||||||||||||||.||.||.||..|.
BPUM_2718___m    855 -GCCGGATATGGTGATTCGTTTTGGACCGATGCCTGTGTCTAAGCCTTTA    903

BSNT_04485___    904 TTCTTATGGCTTAAGGATGATCCG---GCGATTCAGCAAATCGTGATTGA    950
                     |||..||||||..|..|..||.||   |.||.||||   ||.||..||||
BPUM_2718___m    904 TTCAAATGGCTGGAAAAACATGCGGAAGTGAATCAG---ATTGTTGTTGA    950

BSNT_04485___    951 CGAGGATGGAGGCTGGAGAGATCC--GACGCAGGTAAGCGC-GCAT--AT    995
                     .|..|.||||||.|...|||||||  |||     |.||.|| .|||  ||
BPUM_2718___m    951 TGCTGCTGGAGGTTTTCGAGATCCTGGAC-----TGAGTGCTTCATACAT    995

BSNT_04485___    996 GATTCATTGTAATGCGTCTGTTTTTGCTGAGGAGATCATGGCAGGCCTTA   1045
                     .|||.|..||.|||.|.|.|.|||||..||.||      .|.||.|..||
BPUM_2718___m    996 CATTGAAAGTGATGTGGCAGCTTTTGTAGATGA------AGTAGTCAATA   1039

BSNT_04485___   1046 CTGCTGCCAGATCCTCAGAGTGGCTGGAAAAGTGGCAGTTTGTCAATGGG   1095
                     ..|    ||||||..| |.|.||.|  |.||||     |||.|.|||   
BPUM_2718___m   1040 GAG----CAGATCAAC-GTGAGGAT--ACAAGT-----TTTCTAAAT---   1074

BSNT_04485___   1096 CGGTTCCGCGAGCATC-TGCAAA-----CAATCAGCA-------------   1126
                           |||..|||.| |||.||     ||.||||.|             
BPUM_2718___m   1075 ------CGCTGGCAGCATGCTAATTCATCATTCAGAACGCATGCATCTCA   1118

BSNT_04485___   1127 --------GTGAAGATGTTTCGTTTGAAGGCAATCTCTATCGAATC--CT   1166
                             .|||.|||.|.||.|||||.||.|||.|.||.||  ||  ||
BPUM_2718___m   1119 TTATTCTGATGAGGATCTGTCATTTGAGGGGAATGTGTACCG--TCAGCT   1166

BSNT_04485___   1167 TCAGCATCTTGTGCCTGAA-AACAGCTCGCTGTTTGTGGGAAACAGCATG   1215
                     |||||||||..|.|| ||| .|.||....||.|||.|.|||||.||.|||
BPUM_2718___m   1167 TCAGCATCTCTTACC-GAAGGAGAGTGTTCTTTTTATCGGAAATAGTATG   1215

BSNT_04485___   1216 CCGATCAGGGATGTTGATACGTTTTTTGAAAAGCAGGACC---GCCCTTT   1262
                     |||||..|.|||||.|||||||||||||  |||||..|.|   |||.|||
BPUM_2718___m   1216 CCGATTCGTGATGTGGATACGTTTTTTG--AAGCACAATCGAAGCCTTTT   1263

BSNT_04485___   1263 CCGGATTTAT-TCAAACCGGGGAGCAAACGGGATAGACGGTGTCGTCTCC   1311
                     |  ||.|.|| .|.||.||.||.|||||.||.|||||.||.|||||.||.
BPUM_2718___m   1264 C--GAATGATGGCGAATCGAGGCGCAAATGGTATAGATGGCGTCGTGTCT   1311

BSNT_04485___   1312 TCTGCCATGGG--GGTATG------TGAAGGAACAAAAGCGCCTGTTACC   1353
                     .|.||..|.||  .|||||      |||   ||||     |||.||.|||
BPUM_2718___m   1312 ACAGCACTTGGCACGTATGCAGCTTTGA---AACA-----GCCAGTCACC   1353

BSNT_04485___   1354 CTTGTGATTGGAGATTTATCTTTTTATCACGATTTAAACGGCCTGCTGGC   1403
                     .|.|||||||||||||||||.|||||.||.|||.|.||.||.||.||.||
BPUM_2718___m   1354 TTAGTGATTGGAGATTTATCATTTTACCATGATATGAATGGTCTTCTTGC   1403

BSNT_04485___   1404 GGCCAAAAAGCTGGGTATTCCTCTTACTGTGATTCTTGTCAATAATGACG   1453
                     .||.|||..|.|||..|||||.||.||.||..|.||..|.||.|||||.|
BPUM_2718___m   1404 AGCTAAATTGATGGACATTCCACTGACGGTTGTGCTGTTAAACAATGATG   1453

BSNT_04485___   1454 GAGGAGGGA--TTTTC--TCCTTTTTGCCGCAGGCTTCTGAAAAGACACA   1499
                     |||||||.|  |||||  |||||    ||||||||.|||||..|..|..|
BPUM_2718___m   1454 GAGGAGGCATCTTTTCGTTCCTT----CCGCAGGCGTCTGAGGAACCGTA   1499

BSNT_04485___   1500 CTTTGAAGATTTGTTCGGCACACCGACAGGGCTCGATTTCAAGCATGCCG   1549
                     .|.||||.|..|.||.||.||||||||.||.||..||||..||.||||..
BPUM_2718___m   1500 TTATGAAAAACTCTTTGGTACACCGACTGGACTGAATTTTGAGTATGCTT   1549

BSNT_04485___   1550 CTGCACTTTACGGCGGAACGTATTCATGCCCGGCTTCTTGGGATGAA---   1596
                     ||...||.||.||.|||||.|||||                   |||   
BPUM_2718___m   1550 CTAAGCTGTATGGGGGAACCTATTC-------------------GAAACC   1580

BSNT_04485___   1597 TTCA---AAACA--------------GCT-TACGCGCCGCAGGC------   1622
                     ||||   |||||              .|| ||        ||||      
BPUM_2718___m   1581 TTCAACGAAACAAGAATTCCATGATGTCTATA--------AGGCACATAT   1622

BSNT_04485___   1623 AGACAAGCCCGGACTCCATTTGATTGAAATCAAAACGGATCGCCAATCAA   1672
                     |||..||||.|||||.|||||.||||||||..||||.|||||.||.||..
BPUM_2718___m   1623 AGAAGAGCCTGGACTTCATTTAATTGAAATTGAAACAGATCGGCATTCTC   1672

BSNT_04485___   1673 GAGT---CCAGCTTCATCGCGATATGCTGAATGAGGCTGTGC-----GG-   1713
                     |.||   |.||   |||||..|.|||.||.||||       |     || 
BPUM_2718___m   1673 GTGTAAGCAAG---CATCGTCAAATGATGGATGA-------CATATTGGA   1712

BSNT_04485___   1714 -GAAGTGAAAAAACAATGGGAACTGTAA---   1740
                      ||||||||||||.||||....||.|.|   
BPUM_2718___m   1713 AGAAGTGAAAAAAGAATGTCTTCTTTCATAA   1743


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