Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04596 and BPUM_2787

See Amino acid alignment / Visit BSNT_04596 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:15
# Commandline: needle
#    -asequence dna-align/BSNT_04596___mcpA.1.24716.seq
#    -bsequence dna-align/BPUM_2787.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04596___mcpA-BPUM_2787.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04596___mcpA-BPUM_2787.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04596___mcpA
# 2: BPUM_2787
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2180
# Identity:    1349/2180 (61.9%)
# Similarity:  1349/2180 (61.9%)
# Gaps:         382/2180 (17.5%)
# Score: 3800.0
# 
#
#=======================================

BSNT_04596___      1 ATGATGAAAAAAATACTCCAACTCATAAAACAAAGATCAATTACACGGAA     50
                        ||||||...||||...|..|||.|||.|   .|||.|||.||...||
BPUM_2787          1 ---ATGAAATTCATACAGTATTTCAGAAAGC---CATCTATTTCAAAAAA     44

BSNT_04596___     51 GCT-----TCTCGT---------TTCCTTTCTGTCGATCCTCATCATACC     86
                     |||     ||||.|         |||.|||.||||.|     ||||    
BPUM_2787         45 GCTCGTACTCTCTTTCTTATTTATTCTTTTATGTCCA-----ATCA----     85

BSNT_04596___     87 GGTTGTTATATTGGCGATCTTTGCCTATCAATCGGCTAGCAGCTCACTCG    136
                          ||.|.|||||..|||.|.|.|||||..||||.||.|..|  ||..
BPUM_2787         86 -----TTGTGTTGGCATTCTCTTCATATCATACGGCGAGTACTT--CTTT    128

BSNT_04596___    137 ACA-GA-CAGATGATGGGGAGCGCATTGGAAAATGT---ACAGCAATTAA    181
                     |.| || ||.||.|||...||.|||..|||||||||   |||||   ||.
BPUM_2787        129 AAATGATCAAATCATGCAAAGTGCAAAGGAAAATGTCGAACAGC---TAG    175

BSNT_04596___    182 ACGAAATCATTAACACCAGCATCG------GCGAAAAAGAAAACAG----    221
                     ||.|||..||||          ||      |.||||..||||||||    
BPUM_2787        176 ACAAAAATATTA----------CGAAGGTTGTGAAAGTGAAAACAGACGC    215

BSNT_04596___    222 TGCTGATTATTTCAGCGAATGGCTGACAAAAGAGAAATA---CAATGCAA    268
                     .||.||||..||.|||.|||||.|.||   .||||||.|   .|| ||||
BPUM_2787        216 AGCCGATTTCTTTAGCAAATGGATCAC---GGAGAAAAAGCTTAA-GCAA    261

BSNT_04596___    269 AAAG------CA---ATGCAA----GCATTGCAGAGAAATTCTCACAATA    305
                     ||||      ||   ||.|||    ||.||   |||.|.|||        
BPUM_2787        262 AAAGGCACAACAGATATTCAAGGGCGCTTT---GAGCAGTTC--------    300

BSNT_04596___    306 TATCAGCATTAACAAGGATGTAGAATCCATTT------ATACAAGTGACA    349
                      ||.||.||.||..|.||...||||...||||      .|.|||||||..
BPUM_2787        301 -ATGAGTATGAATGATGACACAGAAGGTATTTTTGTCGCTTCAAGTGATG    349

BSNT_04596___    350 CAAAAGGGCACTTTACCCGCTATCCGGATCTTCC-----GATGCCAAGTG    394
                     ..||||.|   |||.|..|.||||     ||..|     .|||||...||
BPUM_2787        350 GCAAAGTG---TTTTCGAGATATC-----CTAACAAAAAAATGCCTGCTG    391

BSNT_04596___    395 GCTAT-----AATCCGGTTGAACGCGACTGGTACAAAAAAGCGGTT--GC    437
                     .||||     ||  ||   ||.||.||.|||||.|||.|  |||.|  ||
BPUM_2787        392 ACTATGTCGCAA--CG---GAGCGGGATTGGTATAAAGA--CGGCTGGGC    434

BSNT_04596___    438 AAATAAAGGGAAA---GTCGTGATCACAG-ACCCTTATAAAACCGCGTCG    483
                     .|| |||.|||.|   ||| || |..||| |||| |||..|||.||.||.
BPUM_2787        435 GAA-AAATGGAGAGCTGTC-TG-TTTCAGCACCC-TATCCAACAGCTTCT    480

BSNT_04596___    484 ACAAATACGATGGTTGTGACAATCGCCCAGCAGACAAAAGATGGTTCAGG    533
                     |||..||||.|.||.||.||.|||.|..|..||..|.|.||.||.|||||
BPUM_2787        481 ACAGGTACGCTTGTCGTCACCATCTCTAAAAAGTTAGAGGACGGATCAGG    530

BSNT_04596___    534 CGTTATCGCAATCAACAT-GACGATTGAAAATCTGCTGAAAACAACCAAA    582
                     .||.||.|||||.|||.| ||| ||||..|||||..| ||||.||.| ||
BPUM_2787        531 AGTCATTGCAATGAACCTAGAC-ATTGCGAATCTAGT-AAAAGAATC-AA    577

BSNT_04596___    583 AAAG--TCAACATCGGCACACAAGGCTACGCATTTATCATGACGAAGGAC    630
                     |.||  |.|||||.||.|.|||||||||.||.||||||    .||||..|
BPUM_2787        578 ATAGCATAAACATTGGGAAACAAGGCTATGCCTTTATC----GGAAGTCC    623

BSNT_04596___    631 AAA----AAAGTTGTCGCACACCCGAATGAAAAATCAGGAACTGAATTAA    676
                     |.|    |...||||.||.||.||.|...|||||.|.|||||..|||||.
BPUM_2787        624 AGATCGCACCTTTGTGGCCCATCCTACGAAAAAAGCTGGAACAAAATTAT    673

BSNT_04596___    677 AAGGCGACTGGCTCGATAAGATGTTGAGTGCT----------GATAAAGG    716
                     ..||.||.|||||.||.||          |||          |||.||||
BPUM_2787        674 CTGGTGAATGGCTAGAAAA----------GCTTTATTCACAAGATGAAGG    713

BSNT_04596___    717 CGATTTTCAA-----TACACCATGGATGGCGATAAGAAAA--AAATGGCC    759
                          |||.|     ||.|...|.||.|  ||.|||||||  ||||||..
BPUM_2787        714 -----TTCTATGAGTTATATGTTTGAAG--GAAAAGAAAAGCAAATGGAA    756

BSNT_04596___    760 TTTGACACAAACAAGTTGACGGGATGGAAGATCGGCGGCACCATGTATTT    809
                     ||...|||||||||...||||||.|||||.||.|.|||.||.||||.|.|
BPUM_2787        757 TTCACCACAAACAAAGCGACGGGCTGGAAAATTGTCGGTACGATGTTTGT    806

BSNT_04596___    810 GGATGAAATCCATGAGGCAGCCCAGCCTGTCCTTCACCT---TGCTTTAA    856
                     |...|||.|..|.||.||.||.|||||.|||.||.||.|   .|||.|.|
BPUM_2787        807 GACAGAAGTGGAAGAAGCTGCACAGCCAGTCTTTAACATGGCCGCTATCA    856

BSNT_04596___    857 TTGTCTTGGCCGCAGCTATTATCAT---AGGGATT---ATCGTCATGACT    900
                     ||   ||.||.|..||..|.|||||   .||||||   |||.||      
BPUM_2787        857 TT---TTAGCTGGCGCGCTCATCATTGGTGGGATTCTAATCTTC------    897

BSNT_04596___    901 TTGATCATTCGGTCGATTACAACACCGCT---GAAACAGCTTGTCGGTTC    947
                     |||||.||.||.||.|||||||.|||.||   .|.|   |||||...|||
BPUM_2787        898 TTGATTATCCGTTCCATTACAAAACCACTTTCTATA---CTTGTTTCTTC    944

BSNT_04596___    948 CTCTAAGCGGATCAGCGAGGGAGATTTGACGGAAACCATTGATATCCGTT    997
                     .||.|||..||||||.|||||||||||.||.||||..||||||.|||..|
BPUM_2787        945 TTCAAAGAAGATCAGTGAGGGAGATTTAACAGAAAAAATTGATGTCCAGT    994

BSNT_04596___    998 CAAAAGATGA-ATTGGGCGAGCTTGGCAAAAGCTTTAACAATATGGCTTC   1046
                     |||||||||| |||||.| ||||.||||.|||||||||..|.|||..|..
BPUM_2787        995 CAAAAGATGAGATTGGAC-AGCTAGGCACAAGCTTTAATGAGATGAGTGA   1043

BSNT_04596___   1047 GTCACTTCGTTCTCTCATACACGC----CATCCAGGATTCCGTAGATAAT   1092
                     ||||.|..|...|.||||.||.||    ||..||    ||.|||||.|||
BPUM_2787       1044 GTCATTAAGAGATGTCATCCAAGCAGTACAAACA----TCTGTAGAAAAT   1089

BSNT_04596___   1093 GTTGCCGCTTCCTCTGAGGAGCTCACTGCATCAGCTGCGCAAACGAGCAA   1142
                     ||.||..||||.|||||.||.||.||.|||...||.|..|||||||..||
BPUM_2787       1090 GTGGCTTCTTCATCTGAAGAACTGACGGCAAGCGCAGGTCAAACGACAAA   1139

BSNT_04596___   1143 GGCAACAGAGCACATTACATTGGCGATTGAACAATTTTCT--AACGGCAA   1190
                     .|||||.||.||.|||||||...|.|||||  ||.|||||  ||||||||
BPUM_2787       1140 AGCAACCGAACATATTACATCATCTATTGA--AACTTTCTCAAACGGCAA   1187

BSNT_04596___   1191 TGAAAAACAAAACGAAAACATTGAAACG-GCAGCAGA-----GCACATTT   1234
                     ||||||.||||.|||||    ||    | |.||||.|     ||.|||||
BPUM_2787       1188 TGAAAATCAAAGCGAAA----TG----GTGGAGCAAAGTGCGGCTCATTT   1229

BSNT_04596___   1235 --ATCAAATGAATGACGGGTTG-ACGAATATGGCTCAAGCTTCTGAAGTG   1281
                       |.|||||||||||.||..|| ||||| .|.||..||.|.|||||.||.
BPUM_2787       1230 AAAACAAATGAATGAAGGACTGAACGAA-GTCGCAGAAACATCTGATGTC   1278

BSNT_04596___   1282 ATCACTGATTCATCTGTTCAATCGACAGAAATTGCAAGT----GA---AG   1324
                     |||||.|..|||||..|||||||  .||||     .|||    ||   ||
BPUM_2787       1279 ATCACAGCGTCATCGATTCAATC--AAGAA-----CAGTCGCCGAATCAG   1321

BSNT_04596___   1325 GCGGCAAGCTTGTTCATCAAACCATCGGCCAAATGAATGTC-ATTGACAA   1373
                     ||||..|||||||..|.||||||.|.|||||.||||| |.| ||.|||.|
BPUM_2787       1322 GCGGACAGCTTGTGGAGCAAACCGTTGGCCAGATGAA-GACGATCGACCA   1370

BSNT_04596___   1374 GTCCGTTAAAGAAGC----GGAG----CAAGTCGTACGCGGATTGGAAAC   1415
                     .||.||.||||||||    ||||    |||        ||||.|.|||..
BPUM_2787       1371 TTCAGTGAAAGAAGCTGAAGGAGTAATCAA--------CGGACTAGAACA   1412

BSNT_04596___   1416 GAAATCGAAAGATATTACAAACATTTTGCGTGTGATCAACGGCATCGCAG   1465
                     .|||||.|||||.||.||||||||..|..|.||.||.||||||||.||.|
BPUM_2787       1413 TAAATCAAAAGACATCACAAACATCCTAGGCGTAATTAACGGCATTGCGG   1462

BSNT_04596___   1466 ACCAGACGAACCTGCTTGCCTTAAACGCAGCAATTGAAGCAGCGCGCGCA   1515
                     |.||.|||||..|.|||||..|.||.|||||.|||||||||||.||.|||
BPUM_2787       1463 ATCAAACGAATTTACTTGCACTCAATGCAGCCATTGAAGCAGCACGTGCA   1512

BSNT_04596___   1516 GGCGAGTACGGCCGCGGCTTCTCCGTTGTAGCGGAAGAAGTAAGAAAACT   1565
                     ||.||||..|||.|.||.|||||.|||||.||.||.|||||..|||||||
BPUM_2787       1513 GGTGAGTCAGGCAGAGGATTCTCTGTTGTTGCAGAGGAAGTGCGAAAACT   1562

BSNT_04596___   1566 GGCAGTACAGTCAGCAGATTCAGCAAAAGAGATTGAAGGATTAATCATCG   1615
                     .|||||.||.|||.|||||||||||||||||||||||     ||.|    
BPUM_2787       1563 TGCAGTTCAATCATCAGATTCAGCAAAAGAGATTGAA-----AAGC----   1603

BSNT_04596___   1616 AAATTGTGAAGGAAATC--------AAT----ACATC----ACTCGGCAT   1649
                        |||||||.||||||        |||    |||||    |.|    ||
BPUM_2787       1604 ---TTGTGAAAGAAATCGTATCTGAAATCGAAACATCTCAAAAT----AT   1646

BSNT_04596___   1650 GTTCCAATCTGTCAATCAAGAGGTGCAGACAGGACTTGACATCACAGATA   1699
                     ||||.||||.||.|||.||||.|||.|||..||.|||..|||.||||||.
BPUM_2787       1647 GTTCAAATCAGTAAATGAAGAAGTGAAGAATGGTCTTTCCATTACAGATC   1696

BSNT_04596___   1700 AAAC---AGAAATGAGCTTCAAACGCATTTCTGAAATGACGAACCAAATC   1746
                     ||||   ||||   ||||||         ||..||||.|...|.|||| |
BPUM_2787       1697 AAACGAAAGAA---AGCTTC---------TCACAAATTAATCAGCAAA-C   1733

BSNT_04596___   1747 GCCGGCGA--ACTGCAA-----AAT---ATGAGTGCGACGGTTCAGC-AG   1785
                     ..|||.||  .||.|||     |||   ||||.|.|.||.||.| || ||
BPUM_2787       1734 AGCGGAGATCGCTACAAGAATTAATGACATGAATACAACAGTAC-GCGAG   1782

BSNT_04596___   1786 CTTTCTGCCAGCTCCGAAGAAGTTTCGGGAGCGTCTGAGCACATT-----   1830
                     |||||            |.||      |||   ||||||||.|||     
BPUM_2787       1783 CTTTC------------AAAA------GGA---TCTGAGCAAATTTCAAA   1811

BSNT_04596___   1831 -GCATCGA---------------TTTCAAAAGAAAGTTCAGC--GCATAT   1862
                      |||..||               |.|||..||||||||||||  ||  ||
BPUM_2787       1812 AGCAGTGAATGAAATTGCAGATGTATCACGAGAAAGTTCAGCAAGC--AT   1859

BSNT_04596___   1863 ACAAGATATCGCGGCGTCAGCCGAAGAGCAGCTTGCTTCCATGGAAGAAA   1912
                     .|||||||||||.||.||.||.|||||||||||||||||.||||||||.|
BPUM_2787       1860 CCAAGATATCGCTGCATCTGCTGAAGAGCAGCTTGCTTCTATGGAAGAGA   1909

BSNT_04596___   1913 TCAGCTCGTCTGCAGAGACCCTTTCGTCTATGGCGGAAGAGCTTCGCGAT   1962
                     |.||.||.|||.|...|||.|||||....|||||||||||..|.||.|||
BPUM_2787       1910 TTAGTTCTTCTTCTACGACTCTTTCCCAAATGGCGGAAGAATTACGTGAT   1959

BSNT_04596___   1963 ATGACCAAACGATTCAAAAT---CGAATAA   1989
                     .|.|..|||...|||||.||   |||||||
BPUM_2787       1960 TTAATTAAAAAGTTCAAGATCAACGAATAA   1989


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