Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04608 and BPUM_2796
See
Amino acid alignment /
Visit
BSNT_04608 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:19
# Commandline: needle
# -asequence dna-align/BSNT_04608___yugS.1.24716.seq
# -bsequence dna-align/BPUM_2796.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04608___yugS-BPUM_2796.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04608___yugS-BPUM_2796.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04608___yugS
# 2: BPUM_2796
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1345
# Identity: 938/1345 (69.7%)
# Similarity: 938/1345 (69.7%)
# Gaps: 107/1345 ( 8.0%)
# Score: 3180.0
#
#
#=======================================
BSNT_04608___ 1 TTGCTTATTTTACA---ATTGATCGCCATTTTTGTTTTGATTGGCATT-- 45
|||..|||||||.| |||..|.|.|||.||..| ||||
BPUM_2796 1 TTGTATATTTTAAACGTATTTTTAGTCATATTACT---------CATTGC 41
BSNT_04608___ 46 ----ACGGCTGTTTTCGTTG-CAGCGGAATTTGCGATCGTCAAAATTAGA 90
||.||..||||.|||| || |.|||||||||||.||.|||||||||
BPUM_2796 42 TGCGACAGCATTTTTTGTTGTCA-CTGAATTTGCGATTGTGAAAATTAGA 90
BSNT_04608___ 91 GGTTCAAAAATCAATCAGCTCATCGAAAGCGGTGACAGCCGAGCACTAGC 140
||.||.||||||||||||||.||.|||||||||||.|...||||..|...
BPUM_2796 91 GGCTCTAAAATCAATCAGCTGATTGAAAGCGGTGATAAGAGAGCCATTCA 140
BSNT_04608___ 141 CGCACATAAAATCATCTCCAATCTTGACGAGTATTTATCAGCCTGCCAGC 190
||.|||.||..||||.||.|||||.|||||.||||||||.||.||.||||
BPUM_2796 141 CGTACAAAAGCTCATATCAAATCTCGACGAATATTTATCTGCGTGTCAGC 190
BSNT_04608___ 191 TCGGGATTACGATTACAGCCCTCGGCCTTGGGTGGCTTGGTGAACCTACA 240
||||.|||||.||.||.||..|.|||.|.||||||||.||.||.||.||.
BPUM_2796 191 TCGGCATTACCATCACGGCTTTAGGCTTAGGGTGGCTGGGCGAGCCGACG 240
BSNT_04608___ 241 TTTGAACGTTTTCTTCATCCCTTATTTACAATGACAGG-----------C 279
.|.||.|.||||||.|||||..|.||| .||| |
BPUM_2796 241 GTCGAGCATTTTCTGCATCCGCTGTTT-------GAGGAGTTGGGGCTTC 283
BSNT_04608___ 280 ATGCCGGAACCGTTTAACC-ACATTGTCACATTTGTAGTTGCATTTATCA 328
||.|||.| |||||| ||||..|..|.|||.|..|.||||||.|.|
BPUM_2796 284 ATTCCGCA-----TTAACCGACATCCTATCGTTTATCATCGCATTTGTGA 328
BSNT_04608___ 329 TCGTCACTTTTTTGCATGTGGTGATGGGGGAGCTTGCCCCGAAAACGGTT 378
||.|.||.|||||.|||||.||..||||.||.||.||.||.||||||.||
BPUM_2796 329 TCATTACGTTTTTACATGTCGTTGTGGGAGAACTAGCGCCTAAAACGATT 378
BSNT_04608___ 379 TCTATTCAAAAAGCTGAAGCTGTAAGCTTATG-GATTGCAAAGCCGCTGA 427
.|.||||||||.||.|||||.||.|||.| || ||..||||||||.||.|
BPUM_2796 379 GCCATTCAAAAGGCAGAAGCAGTCAGCCT-TGTGACAGCAAAGCCACTCA 427
BSNT_04608___ 428 TCTGGTTTTATAAAATCACGTACCCGTTTATTAAAGCATTAAA-----CG 472
|||..||.||||.|.|||.|||||||||||||||||||||||| ||
BPUM_2796 428 TCTTTTTCTATAGAGTCATGTACCCGTTTATTAAAGCATTAAATGGGGCG 477
BSNT_04608___ 473 GCTC--TGCAAGTTTTCTTGTGAAATTGTTTGGCTTTCATTCAGTAAAGG 520
||.| .||| ||||||||||.||.||.||||||||.||.||.|
BPUM_2796 478 GCACGAGGCA-------TTGTGAAATTATTCGGTTTTCATTCTGTTAAAG 520
BSNT_04608___ 521 AGCATCAGGTTGTCATCAGCGAGGAGGAACTAAGACTGATCCTTTCAGAA 570
|.|||.|.||.|..|||||.|||||.|||.|..|.||.||..|.||.|||
BPUM_2796 521 AACATGAAGTGGCGATCAGTGAGGAAGAATTGCGCCTTATTTTATCTGAA 570
BSNT_04608___ 571 AGCTATGAAAAGGGAGAAATCAATCAGTCTGAATTCCGTTATGTAAATAA 620
||||||||.|||||.||.||.||.||.|||||.|.|...|||||.|||||
BPUM_2796 571 AGCTATGAGAAGGGCGAGATTAACCAATCTGAGTACAAGTATGTGAATAA 620
BSNT_04608___ 621 GATTTTTGAATTTGACAACCGGGTAGCGAGAGAGATTATGATTCCGCGGA 670
.||||||||||||||.|||||.||.|||||||||||||||||.||.||.|
BPUM_2796 621 AATTTTTGAATTTGATAACCGAGTGGCGAGAGAGATTATGATCCCTCGTA 670
BSNT_04608___ 671 CAGAAATTGCGGTTATCTCTCTGGAGCAGTCGCTTGAAGAGGCAATTCAT 720
||||||||.|.|..||.....|.||.|||.|.|||||.||.|..|..|||
BPUM_2796 671 CAGAAATTTCAGCGATAGAGATTGAACAGACACTTGATGATGTGACGCAT 720
BSNT_04608___ 721 CACATCATTAATGAACGGTATACACGCTACCCTGTCATCAAAGATGACAA 770
.|.||..|.||.|||.|.||.|||||.|||||.|||||.|||||.||.||
BPUM_2796 721 TATATGCTAAACGAAAGATACACACGTTACCCCGTCATAAAAGAAGATAA 770
BSNT_04608___ 771 GGATCATATTTTAGGGATCATCAACAGCAAAGATATGTTTAAAGCTTATT 820
.||||||.|..|.||..|||||||.|||||||||.|||||||.||...||
BPUM_2796 771 AGATCATGTGATTGGTGTCATCAATAGCAAAGATGTGTTTAAGGCGAGTT 820
BSNT_04608___ 821 TTCTCGGCCA------GCCGATAAAGCTGGAGCAAATCATGAGGCCCGTT 864
|.|||...|| |.|||| ||.|| |..|.|||.|.||.||.
BPUM_2796 821 TCCTCAATCAAGATGTGACGAT-----TGAAG-ACTTAATGCGTCCAGTC 864
BSNT_04608___ 865 ATCAGGGTCATTGAAAGCATTCCTGTTCAACA---GC---TTTTAATCCG 908
||..||||.||||||||.|..|||||||||.| || ||||
BPUM_2796 865 ATTCGGGTGATTGAAAGTACACCTGTTCAAGAATTGCTCATTTT------ 908
BSNT_04608___ 909 CATGCAGAAGGAACGGATTCACATGGCGATTCTCGTAGATGAATACGGGG 958
.|||||.||||||||.|||||.|||.|..|.||||||||.|||||.||.|
BPUM_2796 909 GATGCAAAAGGAACGAATTCATATGTCCGTGCTCGTAGACGAATATGGAG 958
BSNT_04608___ 959 GAACGGCGGGGCTTGTCACTGTAGAGGATATTATAGAGGAAATCGTCGGG 1008
||||.||.|||||||||||.||||||||.||..|||||||||||||.||.
BPUM_2796 959 GAACAGCCGGGCTTGTCACAGTAGAGGACATCTTAGAGGAAATCGTGGGC 1008
BSNT_04608___ 1009 GAAATCCGCGATGAGTATGATCAAGATGAAACACCGCACATCCTGAAAAA 1058
|||||.||.|||||.||||||||.|||||||||||.||.|||.|.|||||
BPUM_2796 1009 GAAATTCGTGATGAATATGATCAGGATGAAACACCTCATATCGTCAAAAA 1058
BSNT_04608___ 1059 GGGCGAGCACCATTATGTGATGGATGGAAAAGCGCTAATAGACGAAGTGA 1108
.||.||...|||.|||||.||||||||||||||..|.||.||.|||||.|
BPUM_2796 1059 AGGTGACTTCCACTATGTCATGGATGGAAAAGCCTTGATTGATGAAGTAA 1108
BSNT_04608___ 1109 ATGACCTTCTCGACATTGCGATTGAAAATGAAGAAATTGATACGATTGCA 1158
||||..|..|.||..|.|||||.||.|||||.||..|||||||.|||||.
BPUM_2796 1109 ATGATTTATTGGATTTAGCGATAGATAATGATGATGTTGATACAATTGCT 1158
BSNT_04608___ 1159 GGCTGGCTTCTAACGCAAAAAATGGA-ACTGAAAGCAGGAGATGTGATAC 1207
||||||.|..|.||.||.|||.|.|| |.||||| ..||.|||..|||..
BPUM_2796 1159 GGCTGGATGATGACACATAAATTTGATATTGAAA-TTGGCGATACGATTG 1207
BSNT_04608___ 1208 AAGCGGAGGGCTGTGAATTTAAAATCCTCGACGCCGAAGATCATCACAT- 1256
||||.||.|||||||||||||..|||.|.||.||.|||||.|||||.||
BPUM_2796 1208 AAGCAGAAGGCTGTGAATTTACCATCATAGATGCGGAAGACCATCATATT 1257
BSNT_04608___ 1257 ----CCGTTTTGTAGAAATTAAAAAAACTGA-----TTTT--TAA 1290
||.|| |||||.||||| || |||| |||
BPUM_2796 1258 CGGACCATT-----GAAATCAAAAA----GATCCACTTTTCCTAA 1293
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.