Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04686 and BPUM_2855

See Amino acid alignment / Visit BSNT_04686 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:28
# Commandline: needle
#    -asequence dna-align/BSNT_04686___yueC.1.24716.seq
#    -bsequence dna-align/BPUM_2855.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04686___yueC-BPUM_2855.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04686___yueC-BPUM_2855.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04686___yueC
# 2: BPUM_2855
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 599
# Identity:     290/599 (48.4%)
# Similarity:   290/599 (48.4%)
# Gaps:         232/599 (38.7%)
# Score: 573.0
# 
#
#=======================================

BSNT_04686___      1 ATG-----------------GAAAAGGGGAT----CATGATTTGT-ATGC     28
                     |||                 ||||  |||||    |.||  .||| ||| 
BPUM_2855          1 ATGAGGCTTAATCTGTTCGTGAAA--GGGATGGCACTTG--GTGTCATG-     45

BSNT_04686___     29 TCTCCTTTTC-CCTTTTCATACCCTCTGC---AGCGGCTGCCCAAACTGA     74
                     ||.|.||||| ||   ||||.||..||||   .||.||||      .|||
BPUM_2855         46 TCCCTTTTTCTCC---TCATTCCTGCTGCTTTCGCTGCTG------GTGA     86

BSNT_04686___     75 AGAAA---ATACAGATGTCGCGCCAAACCAGTAT-GAGAAAAAAGAC---    117
                     |||.|   |||||.|.|||..|||.||..|.||| .||||||||.||   
BPUM_2855         87 AGATACGGATACAAACGTCAAGCCGAATGAATATCAAGAAAAAAAACTTG    136

BSNT_04686___    118 ----------------ATCGA------AATCG--ATACGAATTATTTGCA    143
                                     ||.||      ||.||  |||||||..|  .|||
BPUM_2855        137 ATATTAACTCAAGTATATTGAGGGATCAAACGAAATACGAACAA--AGCA    184

BSNT_04686___    144 TGAAGATACCTACTATGAAGAAAAAACAGAACTGCCTGAGGAACAAAAGG    193
                     ..||||.|.|.||     ||..||||||||..|                 
BPUM_2855        185 AAAAGACATCAAC-----AGTTAAAACAGACAT-----------------    212

BSNT_04686___    194 ATATCACTTTTGATAAACCG---AAGGACAA-----GGA----------C    225
                        ||| |||||.|.|||||   ||    ||     |||          |
BPUM_2855        213 ---TCA-TTTTGCTGAACCGCCTAA----AACTCCGGGAGGGTCTCTTTC    254

BSNT_04686___    226 GCCG-AGCTGATAAAAGATTT--GTTTACATCAACAAATGCCGAGGATTC    272
                     .||| ||||         |||  ||   .|||.|.||     |||     
BPUM_2855        255 ACCGCAGCT---------TTTCAGT---GATCTAAAA-----GAG-----    282

BSNT_04686___    273 CAACACGATTGCGGCCCAGTCGAAA---CAGCT-------TGGA------    306
                      |||       |.|||||    |||   |||||       ||||      
BPUM_2855        283 -AAC-------CCGCCCA----AAACATCAGCTCACATGATGGAAGAGAT    320

BSNT_04686___    307 ----ATTACTTTTGCTGAAAAACCAATGAC-----AAAGACATCATCAAC    347
                         ||..|||||..||        |||.|     |..||||.|.||  .
BPUM_2855        321 GAATATCTCTTTTCGTG--------ATGCCGCAGTATCGACACCTTC--T    360

BSNT_04686___    348 GGAAACAGAAGATGAACAAGAAACA-TCATCATTG--CTGCTGCCGATGA    394
                     ||    .||||||.|| .||||.|| |||||  ||  |||||.|||||.|
BPUM_2855        361 GG----CGAAGATCAA-GAGAAGCAGTCATC--TGCACTGCTTCCGATCA    403

BSNT_04686___    395 TCTATGTCGTACTGATCCTGC-TCGGAATTGCAGGCATCG------TGT-    436
                     |||.||       |.|.||.| |||...||   ||.||||      ||| 
BPUM_2855        404 TCTTTG-------GTTGCTTCATCGTCTTT---GGTATCGTTGTGATGTT    443

BSNT_04686___    437 --TCCTCATCCCAAAAGTCACAGCGCAG---GAAAACAAGAAGGCGTAG    480
                       |.||.||.|||||.||||..|.|.||   |||||.||..||      
BPUM_2855        444 TATTCTGATTCCAAAGGTCAATGTGAAGGCTGAAAAGAAATAG------    486


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