Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04686 and BPUM_2855
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:28
# Commandline: needle
# -asequence dna-align/BSNT_04686___yueC.1.24716.seq
# -bsequence dna-align/BPUM_2855.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04686___yueC-BPUM_2855.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04686___yueC-BPUM_2855.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04686___yueC
# 2: BPUM_2855
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 599
# Identity: 290/599 (48.4%)
# Similarity: 290/599 (48.4%)
# Gaps: 232/599 (38.7%)
# Score: 573.0
#
#
#=======================================
BSNT_04686___ 1 ATG-----------------GAAAAGGGGAT----CATGATTTGT-ATGC 28
||| |||| ||||| |.|| .||| |||
BPUM_2855 1 ATGAGGCTTAATCTGTTCGTGAAA--GGGATGGCACTTG--GTGTCATG- 45
BSNT_04686___ 29 TCTCCTTTTC-CCTTTTCATACCCTCTGC---AGCGGCTGCCCAAACTGA 74
||.|.||||| || ||||.||..|||| .||.|||| .|||
BPUM_2855 46 TCCCTTTTTCTCC---TCATTCCTGCTGCTTTCGCTGCTG------GTGA 86
BSNT_04686___ 75 AGAAA---ATACAGATGTCGCGCCAAACCAGTAT-GAGAAAAAAGAC--- 117
|||.| |||||.|.|||..|||.||..|.||| .||||||||.||
BPUM_2855 87 AGATACGGATACAAACGTCAAGCCGAATGAATATCAAGAAAAAAAACTTG 136
BSNT_04686___ 118 ----------------ATCGA------AATCG--ATACGAATTATTTGCA 143
||.|| ||.|| |||||||..| .|||
BPUM_2855 137 ATATTAACTCAAGTATATTGAGGGATCAAACGAAATACGAACAA--AGCA 184
BSNT_04686___ 144 TGAAGATACCTACTATGAAGAAAAAACAGAACTGCCTGAGGAACAAAAGG 193
..||||.|.|.|| ||..||||||||..|
BPUM_2855 185 AAAAGACATCAAC-----AGTTAAAACAGACAT----------------- 212
BSNT_04686___ 194 ATATCACTTTTGATAAACCG---AAGGACAA-----GGA----------C 225
||| |||||.|.||||| || || ||| |
BPUM_2855 213 ---TCA-TTTTGCTGAACCGCCTAA----AACTCCGGGAGGGTCTCTTTC 254
BSNT_04686___ 226 GCCG-AGCTGATAAAAGATTT--GTTTACATCAACAAATGCCGAGGATTC 272
.||| |||| ||| || .|||.|.|| |||
BPUM_2855 255 ACCGCAGCT---------TTTCAGT---GATCTAAAA-----GAG----- 282
BSNT_04686___ 273 CAACACGATTGCGGCCCAGTCGAAA---CAGCT-------TGGA------ 306
||| |.||||| ||| ||||| ||||
BPUM_2855 283 -AAC-------CCGCCCA----AAACATCAGCTCACATGATGGAAGAGAT 320
BSNT_04686___ 307 ----ATTACTTTTGCTGAAAAACCAATGAC-----AAAGACATCATCAAC 347
||..|||||..|| |||.| |..||||.|.|| .
BPUM_2855 321 GAATATCTCTTTTCGTG--------ATGCCGCAGTATCGACACCTTC--T 360
BSNT_04686___ 348 GGAAACAGAAGATGAACAAGAAACA-TCATCATTG--CTGCTGCCGATGA 394
|| .||||||.|| .||||.|| ||||| || |||||.|||||.|
BPUM_2855 361 GG----CGAAGATCAA-GAGAAGCAGTCATC--TGCACTGCTTCCGATCA 403
BSNT_04686___ 395 TCTATGTCGTACTGATCCTGC-TCGGAATTGCAGGCATCG------TGT- 436
|||.|| |.|.||.| |||...|| ||.|||| |||
BPUM_2855 404 TCTTTG-------GTTGCTTCATCGTCTTT---GGTATCGTTGTGATGTT 443
BSNT_04686___ 437 --TCCTCATCCCAAAAGTCACAGCGCAG---GAAAACAAGAAGGCGTAG 480
|.||.||.|||||.||||..|.|.|| |||||.||..||
BPUM_2855 444 TATTCTGATTCCAAAGGTCAATGTGAAGGCTGAAAAGAAATAG------ 486
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