Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04696 and BPUM_2861
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:30
# Commandline: needle
# -asequence dna-align/BSNT_04696___yukF.1.24716.seq
# -bsequence dna-align/BPUM_2861.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04696___yukF-BPUM_2861.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04696___yukF-BPUM_2861.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04696___yukF
# 2: BPUM_2861
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1290
# Identity: 834/1290 (64.7%)
# Similarity: 834/1290 (64.7%)
# Gaps: 126/1290 ( 9.8%)
# Score: 2388.0
#
#
#=======================================
BSNT_04696___ 1 ATG------CCGAATGATCCGTTTAAATATAGTTTTGACAGACTTGAAGA 44
||| ..||..|||||.|||||.||||||.||||..|..|.||.||
BPUM_2861 1 ATGAAAAAAAAGACAGATCCATTTAAGTATAGTCTTGATCGTTTAGAGGA 50
BSNT_04696___ 45 TGTGGCTGATCATATCAGCGACGTTCTGCGGTGCCCGATCACCATAGAGG 94
||||||.||.||.||.||.||.||.||....|||||.||.||.|||||.|
BPUM_2861 51 TGTGGCAGACCAAATTAGTGATGTGCTCAATTGCCCTATTACTATAGAAG 100
BSNT_04696___ 95 ATGTTAAC-CACAAGC---TGCTTGCCTACAGTACACACAGCGACTGCAC 140
|| || ||..|.| ||.|.|||||.||.|||||.|..||.|..||
BPUM_2861 101 AT----ACGCATCATCGATTGTTGGCCTATAGCACACATAATGATTTTAC 146
BSNT_04696___ 141 AGACCCTGCCCGGACGTCTACCATTATTGGCAGAAGGGTACCGGAGAAGG 190
.||.||.|||.|.||.||.||||||||...|.|..|.||||||||.||.|
BPUM_2861 147 GGATCCCGCCAGAACTTCAACCATTATCTCCCGCCGTGTACCGGAAAAAG 196
BSNT_04696___ 191 TGATTAACAAGTTGTGGAAAGACGGGACAATTCCAGCTC-TCTTAAAAAC 239
|.|||||...|.|.|||||.|||||.|..|||||..|.| |||| |||||
BPUM_2861 197 TCATTAATCGGCTTTGGAAGGACGGCATCATTCCTACACTTCTT-AAAAC 245
BSNT_04696___ 240 GGACCAGCCGATCAGAGTCAAGCAAATTGATGAAGTCGGG-----CTGAG 284
.|||.|.|||.|..|.|||...|||||||..||.|| ||| || ||
BPUM_2861 246 AGACGAACCGCTTCGTGTCCCTCAAATTGCAGAGGT-GGGTTTATCT-AG 293
BSNT_04696___ 285 CAATCGCGTCGCTATTTCGATTTGGAAAAACAAGCAAGTGCTTGGCTTCA 334
|| |.||.||.|||||.||.|||||..||||..||||.||.||.||.|
BPUM_2861 294 CA---GGGTTGCCATTTCAATCTGGAAGGACAAAGAAGTACTCGGTTTTA 340
BSNT_04696___ 335 TATGGGCTCTTGAGATCCA-AAAAACATTGTCCGATGAAGATCTGCTGAC 383
|.|||||..|||| ||||| |.||.|.||.||.||.|||||..|| |||
BPUM_2861 341 TCTGGGCAATTGA-ATCCACACAACCTTTTTCAGAAGAAGACATG--GAC 387
BSNT_04696___ 384 AT--TGCAAATGGCAGCAAAAGCAGTGAAAAACAAGCTTCTCAAACTT-C 430
.| ||.|.|||||||||.|.||.||.||||||||..|.|| .||||| |
BPUM_2861 388 CTTCTGAAGATGGCAGCACATGCTGTAAAAAACAAATTACT-TAACTTAC 436
BSNT_04696___ 431 AAATCAGAAAAACGAAAAATGAAGAACGCAGCCAAGAATTTTTCTGGAAA 480
||||..|.|||.||||||..||.|||||||..||.|||.||||.|||||.
BPUM_2861 437 AAATTCGCAAATCGAAAACAGAGGAACGCAATCAGGAACTTTTTTGGAAG 486
BSNT_04696___ 481 ATGCTGACCGGACACATCCATCAGGAGGATGATATGGCGGATGGGTTCC- 529
|||||.||.||.||.||.|||.|..|.|||||.|||...|| ||
BPUM_2861 487 ATGCTCACTGGTCATATTCATGAAAAAGATGAGATGCTCGA------CCT 530
BSNT_04696___ 530 ----ATAAG-CTTGGAATGGCCGCTCCTTCAGA---GTTTTCCGTTATGA 571
.|||| ||.||.|| |.|.| .|.|||| ||.|.||.|.||.|
BPUM_2861 531 ATTTTTAAGACTCGGTAT--CAGAT-GTCCAGACACGTATGCCATCATCA 577
BSNT_04696___ 572 TCATCCGCATAAATGGCGAGCTGACTGA------AAAAATCGAACAGC-A 614
||.||||..|...||.|||.||.||.|| |.||| ||.||| |
BPUM_2861 578 TCTTCCGGCTTCGTGACGAACTCACAGATGACACAGAAA---AAAAGCTA 624
BSNT_04696___ 615 GCTGCAATATTTACAGGAAACGACCCAGCAGGTTTACGTGCTGCTGGCGA 664
.|| |||||||.||||||.||.|||||.||..|.|||.||.|..|||
BPUM_2861 625 TCT----TATTTACTGGAAACAACGCAGCAAGTCCAAGTGTTGTTAACGA 670
BSNT_04696___ 665 CCGTAGATTCCAATGAACTTATTATATTAACCTCACCCAAAACAGATCAT 714
|.||.||||...|.|||.|.|||||..|...||||||.||||||||.||.
BPUM_2861 671 CTGTTGATTTTCACGAATTCATTATTCTTGTCTCACCAAAAACAGAGCAC 720
BSNT_04696___ 715 CCTTTTCAAGATTTAAAACAGTT-----------TGCTTTAAGTACGCAA 753
||..|.||.|||.|.|||||.|| |||| |||.
BPUM_2861 721 CCGCTGCAGGATATTAAACAATTCACAAGCGGCATGCT--------GCAG 762
BSNT_04696___ 754 AAACAG-CTGAAGGAGCGGTATAAAATAGAAGACGTTTCTATC-GCTTTT 801
.|||.| || ||.||.|||.|.||..|..||| |||.|.| ||..||
BPUM_2861 763 CAACTGTCT----GACCGTTATCATATCCATCACG-TTCAAGCAGCGATT 807
BSNT_04696___ 802 GGCGGAATATAC---AACTCTATTTCT----TTTGTCTCCCGC--TCCTA 842
||.|||||.||| ||| ||.||| || |.|| ||.||
BPUM_2861 808 GGTGGAATTTACGATAAC---ATCTCTCATATT------CAGCCATCTTA 848
BSNT_04696___ 843 TCAGGAAGCATTGTCCGTCTTAAAAACGAAGGAACGGTTCGCTGAAGAGA 892
|.|.||||||.|..|.||.||||||||.|||||.||.|||.|||..||.|
BPUM_2861 849 TAAAGAAGCACTCGCTGTATTAAAAACAAAGGAGCGATTCCCTGTTGAAA 898
BSNT_04696___ 893 CCAAACATTTTTTCAGCTTTTCTGAGTTAGGTATTTATCAATACTTAGAT 942
||.|||.|||...|||.||||||||..|.||||||||||||||.||||||
BPUM_2861 899 CCGAACGTTTGCACAGTTTTTCTGAACTCGGTATTTATCAATATTTAGAT 948
BSNT_04696___ 943 GTCTTAAATGAAAAACGGAAACAGGCGGGC-CAT-----TATAATTACTC 986
|||.|...|||||||||.| .|||| ||| |..|.||||||
BPUM_2861 949 GTCCTCGCTGAAAAACGAA------GGGGCTCATCTTACTCCAGTTACTC 992
BSNT_04696___ 987 GCTTTCCAAACTGGAACAATATGACCGGGATCACCAGTCAAATCTGGTAG 1036
..|.||.||.||||||.|.||.||||.|...||.||.||.||.||.||.|
BPUM_2861 993 TTTATCAAAGCTGGAAGATTACGACCTGAGGCATCATTCCAACCTAGTTG 1042
BSNT_04696___ 1037 AGACGCTAGAGCGCTTTATTGAAGCGGACAGCAACGTGAATACGGCTTCC 1086
|.||.||.||.||.||||||||....||.|||||.|..||||..||..|.
BPUM_2861 1043 AAACCCTTGAACGGTTTATTGACTGTGATAGCAATGCCAATATTGCGGCA 1092
BSNT_04696___ 1087 AAGCTGTTAAATATACACGTTAATACGCTGAATTACCGACTCAAGCGGAT 1136
||||..|||||.||.|||.|.|||||..||||||||.||.|.||.||.||
BPUM_2861 1093 AAGCAATTAAACATCCACATCAATACATTGAATTACAGATTAAAACGTAT 1142
BSNT_04696___ 1137 --CAGCCAGATCGCTGAAATTGATTTGAAAAATGTGAATCAAAAATTCAC 1184
||| |.||.||.|||||.|||||.|||||..|||||.|.|||.|.||
BPUM_2861 1143 TACAG--ACATTGCAGAAATCGATTTAAAAAACATGAATGAGAAAATGAC 1190
BSNT_04696___ 1185 CATCTATTTAGATATCAAACTTCGGCACATGGATTTGTGA 1224
|||.||..|.|||||.||.||.....||.|..||||||||
BPUM_2861 1191 CATATACCTTGATATGAAGCTAAAAAACGTCCATTTGTGA 1230
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