Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04720 and BPUM_2871
See
Amino acid alignment /
Visit
BSNT_04720 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:31
# Commandline: needle
# -asequence dna-align/BSNT_04720___yuiA.1.24716.seq
# -bsequence dna-align/BPUM_2871.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04720___yuiA-BPUM_2871.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04720___yuiA-BPUM_2871.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04720___yuiA
# 2: BPUM_2871
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 253
# Identity: 92/253 (36.4%)
# Similarity: 92/253 (36.4%)
# Gaps: 134/253 (53.0%)
# Score: 240.5
#
#
#=======================================
BSNT_04720___ 0 -------------------------------------------------- 0
BPUM_2871 1 GTGGATGCACGTTTTTTTTTTGACAGATTTTCTTACTTGGTGATCGGGAA 50
BSNT_04720___ 1 ---------------------AT--GAAAACT---------------GCA 12
|| |||||.| |||
BPUM_2871 51 TAAAGTATGGTATGATAAATTATCAGAAAATTTAGATAAGGGAGTGAGCA 100
BSNT_04720___ 13 ACGACAACCGCTTCACATGCA------------------TGCCCATTTTG 44
|....||| .|||||.|| ||.|.||.|||
BPUM_2871 101 ATATGAAC----GCACATACAAAAGAAAAAAAGTCCACCTGTCAATATTG 146
BSNT_04720___ 45 TTCAGGAAAAGGATATTTTCA---ATTGATTCTCGGCGGTTCAGAGACTT 91
|||.||.|||||||||||||| |||| ||||||||.||.||.||.|
BPUM_2871 147 TTCGGGGAAAGGATATTTTCAGCTATTG---CTCGGCGGATCTGAAACAT 193
BSNT_04720___ 92 GTCCGTCTTGCCAGGGGACAGGAAAAGACAGTCATTCTTTTTCCAGCCGT 141
||..|...||..|.|||||||| .|||| || ||||..
BPUM_2871 194 GTGAGGAATGTAAAGGGACAGG-GAAGA-AG-----CTTTAA-------- 228
BSNT_04720___ 142 TGA 144
BPUM_2871 228 --- 228
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.