Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04927 and BPUM_2965

See Amino acid alignment / Visit BSNT_04927 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:39
# Commandline: needle
#    -asequence dna-align/BSNT_04927___yvqF.1.24716.seq
#    -bsequence dna-align/BPUM_2965.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04927___yvqF-BPUM_2965.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04927___yvqF-BPUM_2965.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04927___yvqF
# 2: BPUM_2965
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 817
# Identity:     482/817 (59.0%)
# Similarity:   482/817 (59.0%)
# Gaps:         182/817 (22.3%)
# Score: 1390.0
# 
#
#=======================================

BSNT_04927___      1 ATGACAAAAAAACAGCTTCTCGGATTGATCATTGCTTTATTCGGCATCAG     50
                                                    .||.||  ||.||.||.|.
BPUM_2965          1 -------------------------------GTGATT--TTTGGTATTAA     17

BSNT_04927___     51 TATGTTTTTGCAAATTATCGGAAT---AGGCGATCTGCTGTTTTGGCCGC     97
                     |.|.|||.|..|||||||.||.||   ||.||||   .||||||||||..
BPUM_2965         18 TCTATTTCTCAAAATTATTGGGATCGGAGCCGAT---TTGTTTTGGCCTG     64

BSNT_04927___     98 TCTTTTTTCTGATTGCCGGCTATTTCCTTAAAAAATATTCCCGTGA----    143
                     |.||||||..|.||||.|||||||..||..|        |.||.||    
BPUM_2965         65 TGTTTTTTGCGCTTGCGGGCTATTGGCTGCA--------CTCGAGATCCA    106

BSNT_04927___    144 ----TTGGCTTGGCTCCGTCATGTATATCTTTGCCGCGTTTCTATTTTTG    189
                         ||||||.||.||.||....|||||.|||||||..|||||.|||||.
BPUM_2965        107 AACGTTGGCTCGGTTCAGTTTCCTATATTTTTGCCGGCTTTCTCTTTTTA    156

BSNT_04927___    190 AAAAACCTCTTCAGCATCACCTTTA------------ATTTATTCGGCTA    227
                     |||..|||..|||..||.||.||||            |||||        
BPUM_2965        157 AAATTCCTGCTCAATATTACATTTAGCCTCACAGGATATTTA--------    198

BSNT_04927___    228 TGCGTTTGCCGCATTTCTAATTTACGCCGGCTA-CAGGCTTAT--CAAAG    274
                         ||||||||.|||.|.||.||.|||||||| |  ||||||  .|||.
BPUM_2965        199 ----TTTGCCGCCTTTTTGATCTATGCCGGCTATC--GCTTATTGAAAAA    242

BSNT_04927___    275 GGAAGCCGATATTTGA------------------ACC---GAATGAGAAA    303
                     ..||.||| |.|||||                  |||   |||.||.|||
BPUM_2965        243 CAAACCCG-TTTTTGATATCGATAAAAAGGAAGCACCGGAGAACGATAAA    291

BSNT_04927___    304 C---------AGGTCAATCTCAATAAAAAAGAACATCATGATCCGCCAAA    344
                     |         |.||||||||   |.|||||||       |..|...||||
BPUM_2965        292 CCTTCTCTGAAAGTCAATCT---TGAAAAAGA-------GGGCGAGCAAA    331

BSNT_04927___    345 AGATGTAAAAC----ATCCCGACA----TGC----GCAGC-----TTTTT    377
                     ||    |||||    |.||.||||    .||    |.|||     ||.||
BPUM_2965        332 AG----AAAACAAAGAGCCAGACAAAGCCGCACAAGGAGCATGATTTCTT    377

BSNT_04927___    378 TATCGGTGAGCTGCA-AATGATGAAGCAGCCGTTTGATCTGAATGATTTA    426
                     |||||||||..| || |.|||||||..||||||||.|..|.|.||||||.
BPUM_2965        378 TATCGGTGAAGT-CAGACTGATGAAAAAGCCGTTTCAATTAAGTGATTTG    426

BSNT_04927___    427 AATGTTTCTGGTTTTATCGGTGATATCAAAATCGATTTGTCTAAAGCGAT    476
                     |...|||||||||||||.||.|||.|||||||||||||.||.|||||.||
BPUM_2965        427 ACGATTTCTGGTTTTATTGGGGATGTCAAAATCGATTTATCAAAAGCCAT    476

BSNT_04927___    477 GATTCCCGAGGGAGAAAGCACAATCGTCATTAGCGGAGTCATTGGAAACG    526
                     .||..|.||.|.|||.|||||.|||||.||.|||||..||||.|||.|.|
BPUM_2965        477 TATCGCAGAAGAAGAGAGCACGATCGTGATAAGCGGGCTCATCGGAGATG    526

BSNT_04927___    527 TTGATATTTATGTACCATCGGACCTTGAAGTAGCTGTCAGC---TCGGCT    573
                     |.|||||||..||.||...|||..||||||||..|||.|||   ||||||
BPUM_2965        527 TGGATATTTTCGTTCCGCAGGATATTGAAGTATGTGTGAGCGCTTCGGCT    576

BSNT_04927___    574 GTTTTTATAGGAGACATCA-----ATCTGATCGGCTCGAAGAA--AAGCG    616
                     |   ..||.||.||.||.|     || ||||      |||.||  |||||
BPUM_2965        577 G---CCATTGGTGATATGAAAATTAT-TGAT------GAAAAAAGAAGCG    616

BSNT_04927___    617 GATTAAGCACGAAGGTATATGCCGCGTCA--ACCG---ATTTT--AGCGA    659
                     ||||..|||..||.||.|||     ||.|  ||||   |||.|  .|.||
BPUM_2965        617 GATTCGGCAGTAAAGTGTAT-----GTGATGACCGACAATTATGATGAGA    661

BSNT_04927___    660 GTCAAAGCGCCGGGTCAAAGTGTCCGTTTCCTTATTTATCGGTGATGTGG    709
                     | |||| ||....||.|||.|.|||.|.||.|||.|.|||||.|||||||
BPUM_2965        662 G-CAAA-CGTAAAGTGAAAATCTCCATCTCTTTACTGATCGGAGATGTGG    709

BSNT_04927___    710 ATGTGAAGTACGTATGA    726
                     ||||||..|||.|||||
BPUM_2965        710 ATGTGAGATACTTATGA    726


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04927 and BPUM_2965

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
