Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04940 and BPUM_2981
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:40
# Commandline: needle
# -asequence dna-align/BSNT_04940___yvrC.1.24716.seq
# -bsequence dna-align/BPUM_2981.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04940___yvrC-BPUM_2981.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04940___yvrC-BPUM_2981.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04940___yvrC
# 2: BPUM_2981
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1029
# Identity: 658/1029 (63.9%)
# Similarity: 658/1029 (63.9%)
# Gaps: 162/1029 (15.7%)
# Score: 1975.5
#
#
#=======================================
BSNT_04940___ 1 ATGAAAA----AACGAGCCGGGATATGGACT-GCGCTCC------TGTTG 39
||||||| |||| ||| ||.||| || .|||||| ||.||
BPUM_2981 1 ATGAAAAAGTTAACG-GCC---ATTTGG-CTATCGCTCCTGCTTGTGATG 45
BSNT_04940___ 40 GCTGTTGTTATGCTGGCAGGCTGCGGCA-ATCCTG---CGGATCAGAAGG 85
|.|||| ||| |||||.|| .||| .|.||| |.||.||.||.|
BPUM_2981 46 GGTGTT-TTA-----GCAGGATG-TGCAGGTGCTGAGACAGACCATAAAG 88
BSNT_04940___ 86 ATTCAAAG-----GCAAAACAA-AAAACAG-AAGTG-----TTCCCTGTC 123
||||| .|||||.|| .|||||| .|.|| ||.||||||
BPUM_2981 89 ---CAAAGAGTTCACAAAATAACGAAACAGCGACTGCGGCATTTCCTGTC 135
BSNT_04940___ 124 ACCATTGATGATGC-------------GTCGAACCAAGATGTAACCATCA 160
.|.|||.|.||||| |||||| ||||
BPUM_2981 136 TCAATTAAAGATGCAGCTGGTAAAACAGTCGAA-------------ATCA 172
BSNT_04940___ 161 AAAAAGAGCCAAAAAAGATTGTTTCATTAATGCCGAGCAACACAGAAATT 210
||.||.||||||||...||||||||||||||.||.||.||.|||||..||
BPUM_2981 173 AAGAACAGCCAAAACGAATTGTTTCATTAATTCCAAGTAATACAGAGGTT 222
BSNT_04940___ 211 ACATACGCACTCGGCCTTGGTGACAAAGTGGTCGGTGTCACCACAAACGA 260
.|.||.||.|||||.|||||.||.|||.||||.|| ||||
BPUM_2981 223 GCGTATGCGCTCGGTCTTGGAGATAAAATGGTTGG-----------ACGA 261
BSNT_04940___ 261 T-----------ACCTATCCAAAGGAAGTCAAAAAGGTTGAGAAAGTCGG 299
| |..||||||||||||||..|||||||.||||||.|.||
BPUM_2981 262 TCTGATTTTGACAATTATCCAAAGGAAGTTGAAAAGGTAGAGAAAATTGG 311
BSNT_04940___ 300 -AGATATGAATGTAAACGTTGAAAAAGTCATTTCTCTAAAACCAGATCTC 348
.||..||||| |.||.||.||.|||||||||||..|||||||.|||||.
BPUM_2981 312 CGGACTTGAAT-TCAATGTCGAGAAAGTCATTTCCTTAAAACCTGATCTG 360
BSNT_04940___ 349 GTTCTGGCCCATGAGTCTTCCATGTCAGCATCAGCGGATGCCATCAAACA 398
||.||.||.||||..||....||| |.||||...||||...|.|||||
BPUM_2981 361 GTACTAGCTCATGCCTCGCAGATG---GGATCAAAAGATGGATTTAAACA 407
BSNT_04940___ 399 GCTGAAAGACGCGGGCATTACAGTGCTGACTGTCAATGATGCACAATCAT 448
|||..|.||.||.||.|||..|||.||||||||.|||||||| ||.
BPUM_2981 408 GCTAGAGGATGCAGGGATTCAAGTACTGACTGTAAATGATGC-----CAC 452
BSNT_04940___ 449 TCTCC------GAGGTGTACAAATCAATCGAAATGATCGGAGAAGCTGGC 492
| ||| ||.|||||||||||.|||.|.||||||||.|||||....
BPUM_2981 453 T-TCCTTTAAGGATGTGTACAAATCGATCAATATGATCGGTGAAGCAACA 501
BSNT_04940___ 493 GGGGCGGAGAAAAAAGCCGATC-----AGCTCGT-GAAAAGTATGAAATC 536
||.|| .|||||||| ||| ||||.|| ||..|| ||||||.|
BPUM_2981 502 GGTGC---AAAAAAAGC--ATCAACAAAGCTTGTAGACGAG-ATGAAAGC 545
BSNT_04940___ 537 AGATCTAAA--GGATA--TTCAAGAAA-AAGCGAAAACCATTTCAAAAGA 581
| ||| |.||| .|||||||| ||||..|..|.||.||.|||||
BPUM_2981 546 A-----AAATTGAATAACATCAAGAAACAAGCAGAGGCGATCTCTAAAGA 590
BSNT_04940___ 582 CGAGGAGAAAAGCGTATTTATCGAGGTTTCTCCTGATCCTGACATTTATA 631
|.|..|.||||..||.|||.|.||.||.||...|..||||||.|||||||
BPUM_2981 591 CAAACAAAAAACAGTCTTTGTTGAAGTATCAGGTACTCCTGAAATTTATA 640
BSNT_04940___ 632 CAACCGGAAAAGATACGTTTATGAATGAAATGCTGAATGTCATCCATGCT 681
||||.||||...||||.||||||.|.||||||.|...|||.||||||||.
BPUM_2981 641 CAACAGGAACTCATACATTTATGGACGAAATGTTATCTGTGATCCATGCG 690
BSNT_04940___ 682 AAAAACGCAGCTGCGGATCAGACAGGATGGGTGCAAATGACAGACGAGGC 731
|||||.||.||||..|||||.||.||.|||||||||||||||||.||..|
BPUM_2981 691 AAAAATGCTGCTGGTGATCAAACTGGCTGGGTGCAAATGACAGAAGAATC 740
BSNT_04940___ 732 GATCGTAAAACTCAATCCTGATGCAATTGTTACAACGGA------CGGTG 775
|||..|.||||..||.|||||.|.|||.||.||||..|| |.||.
BPUM_2981 741 GATTATTAAACGAAACCCTGACGTAATCGTCACAATTGATGGGTCCAGTT 790
BSNT_04940___ 776 TGAAAGCGAAAGCTG---TGGAAAAACGCGATGGCTGGA--GCGAAATCA 820
| ||||| ||.||||..|.|||||||||| ||| ||||
BPUM_2981 791 T---------AGCTGATCTGAAAAAGAGAGATGGCTGGAATGCG--ATCA 829
BSNT_04940___ 821 ATGCTGT----GAAACATCATCGTGTATATGATGTGGACCCTGATCTTGT 866
|.||.|| |||| |.|..||.|.|.|..||.|..|.|||||.|.
BPUM_2981 830 AAGCAGTAAAGGAAA----AACAAGTCTTTCAATTGAATACGGATCTCGC 875
BSNT_04940___ 867 GACACGTTCCGGTCCCCGTCTGATCGAAGGGGTCGAAGAACTTGCGGAAA 916
..||.|..|.||.||.||..||.|.|||||.|||||.|..||||||.|||
BPUM_2981 876 ATCAAGACCGGGACCGCGATTGGTTGAAGGAGTCGAGGCTCTTGCGAAAA 925
BSNT_04940___ 917 GCATTTACCCGGATACGTTTAAAGAATAA 945
||||.||.||.||.|||||.|||.||
BPUM_2981 926 GCATCTATCCTGACACGTTCAAATAA--- 951
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