Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04979 and BPUM_3003

See Amino acid alignment / Visit BSNT_04979 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:42
# Commandline: needle
#    -asequence dna-align/BSNT_04979.1.24716.seq
#    -bsequence dna-align/BPUM_3003.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04979-BPUM_3003.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04979-BPUM_3003.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04979
# 2: BPUM_3003
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 714
# Identity:     463/714 (64.8%)
# Similarity:   463/714 (64.8%)
# Gaps:          81/714 (11.3%)
# Score: 1404.5
# 
#
#=======================================

BSNT_04979         1 ATGGCTTTACTG-CCGAGTAGCATAAGCGCTTCAGAATTTTTCACACCCG     49
                     |||.||.|.||| |.||                |||.|||.|..|||||.
BPUM_3003          1 ATGCCTATGCTGACTGA----------------AGACTTTCTATCACCCA     34

BSNT_04979        50 TTGCGCTTTCCTTTCAGGTGGCGGCAGTTGCCGGAATTGTT-GTCATTAT     98
                     ||..|||.|||.||||.||||||...|||..||| |.|||| |.||.|.|
BPUM_3003         35 TTTGGCTGTCCATTCAAGTGGCGATCGTTAGCGG-ACTGTTGGCCACTGT     83

BSNT_04979        99 TCTCGGAACA--------CTTGCTGGAGCATGGATGTCACGGGCATCATT    140
                     |.|.||.|||        |||        .||||||.|.||..||.|.||
BPUM_3003         84 TTTTGGCACAACGATTGGCTT--------TTGGATGGCGCGAACAACTTT    125

BSNT_04979       141 TTTCGGAAAAACGGCACTCGAAACATGTTTTATGCTTCCGCTCGTTCTTC    190
                     |...||.||||.|....|.|||||...|.|.|||.|.||.||||||||.|
BPUM_3003        126 TAAAGGGAAAATGCTTGTGGAAACGCTTCTGATGATGCCACTCGTTCTCC    175

BSNT_04979       191 CGCCTACTGTTGTCGGTTTTATTTTGATCGTCATTTTCGGAAAGCACAGC    240
                     |.||.||.||.||.||.|||.|.|||.|||||.|.||||||||.||.|||
BPUM_3003        176 CACCAACAGTCGTTGGCTTTTTATTGCTCGTCGTATTCGGAAAACATAGC    225

BSNT_04979       241 TTCATCGGACAAGCCATCGAGTGGATTTTCCAGCAGCCTGTCATTTTCAC    290
                     ||.||.||....||.||.||.|||||.|||||.|||||.|||||||||||
BPUM_3003        226 TTAATAGGGGGCGCGATTGAATGGATCTTCCATCAGCCGGTCATTTTCAC    275

BSNT_04979       291 CTGGTGGGCCGCTGTGATCGCCTCGGCTGTTGTAGCCTTTCCGCTTATGT    340
                     .||||||||.||.||.|||||.|||.|.||.||.||.||||||||.||||
BPUM_3003        276 ATGGTGGGCGGCGGTCATCGCTTCGACAGTCGTCGCATTTCCGCTCATGT    325

BSNT_04979       341 ATCAATCAGCCAAAACCGGATTTGCTGAC-ATTGATCCCGATATACAAGG    389
                     ||||||||||.||..|.||.|||.|| || |||||..|.|||||..||||
BPUM_3003        326 ATCAATCAGCAAAGGCGGGCTTTTCT-ACAATTGAGTCAGATATTGAAGG    374

BSNT_04979       390 TGCGGCAATGGTAGACGGCGCTAGCA--GATGGAAAGTGTTTATCCATAT    437
                     .||.||||..|||||.||.|||  ||  .||...||||.|||..|.||||
BPUM_3003        375 GGCTGCAAAAGTAGATGGTGCT--CATTCATTCCAAGTCTTTGCCTATAT    422

BSNT_04979       438 CTCCGTCCCGCTTGC----CTATCCTTCGTTACTGACCGGAAGCATCCTC    483
                     ..|.||.||.|||||    |.||||.||    .||.|.||.||||||||.
BPUM_3003        423 TACTGTACCTCTTGCCCTGCCATCCCTC----TTGTCTGGCAGCATCCTT    468

BSNT_04979       484 AGCCTTGCGCGGGCGCTCGGAGAATTTGGCGCAACACTCATGTTTGCAGG    533
                     |||.||||..|.||.||.||||||||.||.||.||..|.||||||||.||
BPUM_3003        469 AGCTTTGCAAGAGCCCTTGGAGAATTCGGAGCGACCTTAATGTTTGCTGG    518

BSNT_04979       534 AAACATCCCCGGTGTTACGCAAACACTGCCGACGGCGATATATGTCGC-A    582
                     .|||||.||.||....||.||||||||.||.||.||.||.|||||.|| |
BPUM_3003        519 CAACATTCCAGGAAAAACCCAAACACTCCCAACCGCTATCTATGTGGCGA    568

BSNT_04979       583 TTGGATTCCGGCAACAATAC-------CCTTGCTTGGGCGTGGGTCGTCT    625
                     || |||||.||       ||       .|||||||||||.|||....|||
BPUM_3003        569 TT-GATTCTGG-------ACGCATGGAGCTTGCTTGGGCCTGGACAATCT    610

BSNT_04979       626 GTATTGTAGTCATTTCCTTTTTGATGCTGTTT-----TTCATTCAACAGA    670
                     ||||.||..||.|.||.|||.|.||||| |||     |.|.|     |||
BPUM_3003        611 GTATCGTGATCTTATCTTTTATAATGCT-TTTGGCTGTGCGT-----AGA    654

BSNT_04979       671 AAAAAACGCACTAA    684
                     ||.|||     |||
BPUM_3003        655 AATAAA-----TAA    663


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