Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04995 and BPUM_3008
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:43
# Commandline: needle
# -asequence dna-align/BSNT_04995___bdbC.1.24716.seq
# -bsequence dna-align/BPUM_3008___bdbC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04995___bdbC-BPUM_3008___bdbC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04995___bdbC-BPUM_3008___bdbC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04995___bdbC
# 2: BPUM_3008___bdbC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 440
# Identity: 305/440 (69.3%)
# Similarity: 305/440 (69.3%)
# Gaps: 49/440 (11.1%)
# Score: 966.5
#
#
#=======================================
BSNT_04995___ 1 ATGAAAAATAGAATCGTATTT--TTATA---TGCTTCCTGGGTTGTGGCT 45
|||||.||| ||.|.||||| ||.|| |||| |||.|||| ||
BPUM_3008___b 1 ATGAAGAAT--AAGCTTATTTACTTGTACAGTGCT---TGGATTGT--CT 43
BSNT_04995___ 46 CTTATC---GCTATGCTGGGCAGCCTGTATTTCAGTGAAATCAGAAAGTT 92
| .||| ||.|.|.||.|||||||||||||.||||||||.|.||||||
BPUM_3008___b 44 C-GATCGTTGCGACGATGAGCAGCCTGTATTTAAGTGAAATTAAAAAGTT 92
BSNT_04995___ 93 TATTCCATGTGAACTGTGCTGGTACCAGCGTATCCTCATGTATCCGCTCG 142
|||||||||.||..|||||||||.||||||.||..|||||||.|||||||
BPUM_3008___b 93 TATTCCATGCGATATGTGCTGGTTCCAGCGCATTTTCATGTACCCGCTCG 142
BSNT_04995___ 143 TCCTGATTT--TAGGCATCGCCACCTTTCAAGGGG--------ACACACG 182
|.|| ||| ||||.||.||.||.||.| |||| |
BPUM_3008___b 143 TGCT--TTTACTAGGAATTGCTACGTTCC--GGGGTGATGTTAA------ 182
BSNT_04995___ 183 AGTGAAAAAATATGTGCTCCCAATGGCGATTATAGGGGCATTCATTTCGA 232
||||||..|.||.||.||.||..||||..|.||.||.||.|.|.||||.|
BPUM_3008___b 183 AGTGAAGTATTACGTACTGCCTTTGGCTGTCATCGGTGCTTGCTTTTCCA 232
BSNT_04995___ 233 TC-ATGCATTACTTAGAGCAAAAAGTGCCCGGCTTTAGCGGC-ATTAAGC 280
|| || |||||..|.||.||||||.|.||.|||||| |||.| |||...|
BPUM_3008___b 233 TCTAT-CATTATATGGAACAAAAAATCCCAGGCTTT-GCGTCGATTCGCC 280
BSNT_04995___ 281 CATGTGTCAGCGGCGTGCCGTGCTCGGGCCAATATATTAACTGGTTTGGT 330
|.|||.||||||||.|.||.||.||.|...|.|||.|.||||||||||||
BPUM_3008___b 281 CTTGTCTCAGCGGCATTCCTTGTTCTGTAGATTATTTGAACTGGTTTGGT 330
BSNT_04995___ 331 TTTATTACGATTCCATTCCTGGCCCTGATTGCTTTTATCCTGATTATCAT 380
|||||.||.|||||..|..|.||.||.|||||.|||||.|||||.|||||
BPUM_3008___b 331 TTTATCACCATTCCGCTATTAGCACTTATTGCATTTATTCTGATCATCAT 380
BSNT_04995___ 381 TTTTATGTGCCTGCTG--AAAGGCGAAA-AATCTGAATAA 417
...|||| |||||| |||.||.||| || ||.|||
BPUM_3008___b 381 CAGTATG---CTGCTGTTAAATGCAAAAGAA---GATTAA 414
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