Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05002 and BPUM_3021

See Amino acid alignment / Visit BSNT_05002 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:44
# Commandline: needle
#    -asequence dna-align/BSNT_05002___yvgX.1.24716.seq
#    -bsequence dna-align/BPUM_3021.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05002___yvgX-BPUM_3021.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05002___yvgX-BPUM_3021.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05002___yvgX
# 2: BPUM_3021
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2633
# Identity:    1641/2633 (62.3%)
# Similarity:  1641/2633 (62.3%)
# Gaps:         415/2633 (15.8%)
# Score: 4733.5
# 
#
#=======================================

BSNT_05002___      1 ATGTTGAGTGAACAAAAGGAAATCGCGATGCAGGTCTCTGGTATGACCTG     50
                            .|||  |.||||||||||...|.||..|..|.||.||||||||
BPUM_3021          1 -------ATGA--AGAAGGAAATCGACTTTCAAATTACGGGGATGACCTG     41

BSNT_05002___     51 TGCGGCATGTGCTGCCAGAATTGAAAAAGGCCTGAAGCGGATGCCCGGTG    100
                     |||.||.|||||.|...|.||||||||.||..||||..||.||...||||
BPUM_3021         42 TGCTGCCTGTGCAGGACGCATTGAAAAGGGATTGAACAGGCTGGAAGGTG     91

BSNT_05002___    101 TCACGGATGCAAATGTTAATCTGGCAACGGAAACATCAAATGTAATCTAC    150
                     |...||||||.|||||.|||.||||...|||||||||..||||..|.||.
BPUM_3021         92 TGGAGGATGCCAATGTGAATTTGGCGCTGGAAACATCTCATGTTGTGTAT    141

BSNT_05002___    151 GATCCTGCTGAAACAGGGACT----GCAG-CGAT-TCAAG-AAAAAATAG    193
                     ||..|.|    ||||   |||    .||| .||| ||||| |||||||..
BPUM_3021        142 GAAGCAG----AACA---ACTCACACCAGATGATCTCAAGAAAAAAATTC    184

BSNT_05002___    194 AAAAGCTGGGCTATCACGTTGTTACAGAAAAAGCTGAATTCGATATTGAA    243
                     ||...||.|||||..|.||.||.|..||..||||.|||||.|||||.||.
BPUM_3021        185 AATCCCTCGGCTACGATGTGGTGATGGAGCAAGCAGAATTTGATATAGAG    234

BSNT_05002___    244 GGCATGACCTGTGCGGCTTGCGCCAATCGGATTGAAAAACGGCTTAACAA    293
                     ||.|||||.|||||.||.||.|||||.||.||.||.|||         ||
BPUM_3021        235 GGAATGACGTGTGCAGCGTGTGCCAACCGAATCGAGAAA---------AA    275

BSNT_05002___    294 AAT-----AGAAGGC----GTCGCAAATGCAC----CAGTAAACTTCGCT    330
                     |||     .||.|||    ||.|   || |||    |.||.|||||.||.
BPUM_3021        276 AATCAATCGGATGGCTGGTGTTG---AT-CACGGATCTGTGAACTTTGCG    321

BSNT_05002___    331 TTAGAAACAGTTACGGTCGAATACAATCCA----AAAGAAGCGTCT----    372
                     .|.||.||..||..||||...||..|.|||    |||    |||||    
BPUM_3021        322 CTGGAGACCCTTCAGGTCACGTATCACCCAGGGCAAA----CGTCTACAA    367

BSNT_05002___    373 GTCGGCGATTTGAAAGAAGCGGTAGATAAG---CTTGGATAT--------    411
                     ||    |||.|.||.||||||||   |.||   .||||.|||        
BPUM_3021        368 GT----GATATAAAGGAAGCGGT---TCAGTCCATTGGGTATTCTTTAAT    410

BSNT_05002___    412 -----AAGCTAAAGTTGAAGGGGGAACAGGACAGTGAGGCTGCTGCTGCT    456
                          .||||..||.|||||      |||   ||..|||           
BPUM_3021        411 TGAACCAGCTGTAGATGAAG------CAG---AGGAAGG-----------    440

BSNT_05002___    457 AAAAAGAAAGAAGAACG---------------GAAGCAAACAGCGAGACT    491
                       |||||||||..|.||               ||||||.||.|||.|..|
BPUM_3021        441 --AAAGAAAGATCATCGCCAAGCAGCAATAGAGAAGCAGACGGCGCGCTT    488

BSNT_05002___    492 GATTTTTTCAGCTG-TCCTGTCATTTCCATTGCTTTGGGCGATGGTGAGC    540
                     ..|.|||||| .|| ||||||||.|.||..|.||||||||.|||||.|||
BPUM_3021        489 TCTATTTTCA-ATGATCCTGTCACTGCCGCTTCTTTGGGCAATGGTCAGC    537

BSNT_05002___    541 CATTTTACATTTACATCATTCATTTGGGTACCCGATATATTTC-TCAATC    589
                     ||||||.|.||.||.||.||.||||||.|.||.|| |...||| |.||||
BPUM_3021        538 CATTTTTCTTTCACGTCTTTTATTTGGCTGCCTGA-AGCGTTCATGAATC    586

BSNT_05002___    590 CGTGGATGCAATTTGCGCTGGCGACACCAGTCCAATTTCTGATCGGCTGG    639
                     |.|||.|.||..|.|||.|.||..||||.||.||.||..|..||||||||
BPUM_3021        587 CTTGGGTTCAGCTGGCGTTAGCAGCACCCGTTCAGTTCATTGTCGGCTGG    636

BSNT_05002___    640 CCGTTTTATGTGGGTGCGTATAAGGCGCTCAGAAATAAAAGCGCCAATAT    689
                     ||.||.|||||.|||||||||||.|||.|..|.||||||||.|||||.||
BPUM_3021        637 CCCTTCTATGTAGGTGCGTATAAAGCGTTACGTAATAAAAGTGCCAACAT    686

BSNT_05002___    690 GGATGTATTGGTCGCCCTCGGTACGACGGCTGC---TTACGCTTATAGTC    736
                     ||||||..|.|||||.||.||.||..|.|||||   ||.|   ||||||.
BPUM_3021        687 GGATGTTCTTGTCGCACTTGGGACATCAGCTGCGTTTTTC---TATAGTT    733

BSNT_05002___    737 TTTATCTTACTTTTCAAAGTCTTGGATC------TCACGGGCATACA-GA    779
                     |.||         |.||||..||...||      ||| .||||.||| ||
BPUM_3021        734 TATA---------TGAAAGCATTCAGTCAGCGGTTCA-AGGCACACATGA    773

BSNT_05002___    780 CGG----CCTTTACTATGAAACAAGCGCGATTTTGCTG--------ACGC    817
                      ||    |||.||.|||||||||||        |||||        |||.
BPUM_3021        774 -GGCAGCCCTCTATTATGAAACAAG--------TGCTGTACTCATTACGT    814

BSNT_05002___    818 TGATTTTATTAGGCAAGTTGTTTGAAACAAAAGCAAAAGGCCGTTCCTCG    867
                     ||||..||.|.||.||.||..|.|||.|||.|||||||||..|.||.||.
BPUM_3021        815 TGATCGTACTCGGTAAATTAATGGAAGCAAGAGCAAAAGGGAGATCATCA    864

BSNT_05002___    868 GATGCGATTAAAAAGCTGATGAAGCTTCAAGCGAAAACAGCGACTGTTGT    917
                     ||.||||||.|||||||||||...||.|||||||||..||||....|||.
BPUM_3021        865 GAAGCGATTCAAAAGCTGATGGGTCTACAAGCGAAAGAAGCGGTCATTGA    914

BSNT_05002___    918 AAGAGACGGACAGGAGCAAATCATCCCGATCGATGAAGTGCTTGTTAATG    967
                     ..||||.||..|.|||...|.|.|.||.||...|||||||...||.||||
BPUM_3021        915 GCGAGATGGGAAAGAGATGACCGTGCCTATTTCTGAAGTGAAAGTAAATG    964

BSNT_05002___    968 ACATTGTTTACGTCAAACCCGGCGAACGAA--TTCCTGTCGACGGAGAAG   1015
                     ||.||||.|..||||||||.||.||  |||  |.||.|||||.|||||..
BPUM_3021        965 ACCTTGTGTTTGTCAAACCGGGAGA--GAAAGTACCGGTCGATGGAGAGA   1012

BSNT_05002___   1016 TGGTTGAAGGCCGTTCAGCGGTTGACGAATCGATGATTACAGGAGAAAGT   1065
                     |.||.||.|||....|.||..|.||.||.||.|||||.||.||.||||||
BPUM_3021       1013 TCGTGGAGGGCACAACCGCAATCGATGAGTCCATGATAACTGGCGAAAGT   1062

BSNT_05002___   1066 CTTCCTGTTGACAAAAATCCTGGTGACAGCGTGACAGGTTCAACCGTTAA   1115
                     .|.||||||||.||||...|||||||....||.|..||..|||||.|.||
BPUM_3021       1063 TTGCCTGTTGATAAAACGGCTGGTGATTCGGTCATCGGGGCAACCATCAA   1112

BSNT_05002___   1116 CGCAAACGGCTTTCTGAAAATTAAAGCTGTCAACG--TCGGAAAGGATAC   1163
                     ...|||.||.|||.|.|||.|.||||| |.|||.|  |.||||| ||.||
BPUM_3021       1113 TAAAAATGGGTTTGTAAAAGTGAAAGC-GACAAAGGTTGGGAAA-GAGAC   1160

BSNT_05002___   1164 TGCGCTTTCTCATATCATCAAAATTGTTGAGGAAGCACAAGGGTCAAAAG   1213
                     .||.|||||.||.||.|||..|.|.||.||..|||||||.||.|||||||
BPUM_3021       1161 CGCCCTTTCACAGATTATCCGAGTCGTAGAACAAGCACAGGGCTCAAAAG   1210

BSNT_05002___   1214 CGCCGATCCAGCGTCTCGCTGACCAGATTTCAGGCATTTTTGTACCCATT   1263
                     |.|||||.||..|..|.||.||.||.||.|||||.||.||.||.||.||.
BPUM_3021       1211 CACCGATTCAAAGGATGGCCGATCAAATATCAGGTATATTCGTTCCTATC   1260

BSNT_05002___   1264 GTATTGGGGATTGCCGTTCTCACTTTTCTCATTTGGTACCTTTGGGCGGC   1313
                     ||..|.||.|||||.||.|||||.||.||.|||||||   |||       
BPUM_3021       1261 GTTGTAGGAATTGCAGTGCTCACCTTCCTGATTTGGT---TTT-------   1300

BSNT_05002___   1314 TCCTGGCGATTTTGCTG---------AAGCGATCAGCAAG----------   1344
                     ||        ||||.||         |.|.|| |||| ||          
BPUM_3021       1301 TC--------TTTGTTGATCCAGGAAATGTGA-CAGC-AGCCCTTGAAAC   1340

BSNT_05002___   1345 -TTCATTGCGGTTCTTGTCATTGCCTGTCCTTGCGCCCTCGGTCTTGCCA   1393
                      ||.||.|||||..|.||.||.||.|||||.||.||.|||||.|||||.|
BPUM_3021       1341 CTTTATAGCGGTCATCGTTATCGCATGTCCGTGTGCACTCGGCCTTGCTA   1390

BSNT_05002___   1394 CTCCGACGAGCATAATGGCTGGATCTGGACGCGCTGCTGAATTCGGGATT   1443
                     |.||.||....||.|||||||||...||.||.||.|||||||..||.||.
BPUM_3021       1391 CACCAACCTCGATTATGGCTGGAAGCGGCCGTGCCGCTGAATCAGGCATC   1440

BSNT_05002___   1444 TTATTTAAAGGCGGCGAGCATTTAGAAAAAACAC-ATCGTCTCGATACCA   1492
                     .|.|||||||||||.||||||||||||...||.| ||| .|||||.||..
BPUM_3021       1441 CTGTTTAAAGGCGGGGAGCATTTAGAAGTGACTCAATC-ACTCGACACGG   1489

BSNT_05002___   1493 TTGTTCTTGATAAAACCGGAACCGTGACAAACGGGAAGCCGCGTCTGACA   1542
                     |.||..|.||||||||.|||||.||||||||.|||.|.|||.||||||||
BPUM_3021       1490 TGGTGTTAGATAAAACGGGAACTGTGACAAAAGGGGAACCGAGTCTGACA   1539

BSNT_05002___   1543 GAT-----GCCATTCCATTCGGCCATTTTGA-AGAAAAAGATTTGCTTCA   1586
                     |||     |.|||   ||   ||.|.||.|| ||||.|.|..||||||||
BPUM_3021       1540 GATGTGCAGGCAT---AT---GCTAATTGGACAGAAGATGCGTTGCTTCA   1583

BSNT_05002___   1587 ATTTGCAGCGGCAGCGGAAACGGGA-TCAGAGCATCCGCTTGGCGA-AGC   1634
                     .||.|.||...||||.| |||.|.| ||.||.||.|||||| ||.| |||
BPUM_3021       1584 GTTAGTAGGATCAGCTG-AACAGCAGTCGGAACACCCGCTT-GCTAGAGC   1631

BSNT_05002___   1635 GATTATTGCTGGCGTGAAAGATAAAGGGCTTGA-------GATACCGAAA   1677
                     .||.|..|.|||..||||.||..||||.|||||       ||.|..|||.
BPUM_3021       1632 CATCACAGATGGAATGAAGGAACAAGGTCTTGAAGTGGTCGAGATTGAAG   1681

BSNT_05002___   1678 CTT---------ACCC--------GCTTTGAAGCAAAAGTCGGC-GCAGG   1709
                     |.|         ||||        |..||||||||||    ||| |||||
BPUM_3021       1682 CCTTCCAAGCGGACCCAGGTCATGGGATTGAAGCAAA----GGCAGCAGG   1727

BSNT_05002___   1710 ---CA---TTTTGGCTGAAGCCGGAGGAA----AAAGC-ATTCTCGTCGG   1748
                        ||   ||||||.|         ||||    .|||| |||        
BPUM_3021       1728 ACACAAGCTTTTGGTT---------GGAACGCGTAAGCTATT--------   1760

BSNT_05002___   1749 CACAAGAAAATTAATGGAGAGC------GAACAGGTTG-AGCATGGGGCT   1791
                      || |||||..|.||    |.|      ||.||.||.| |||||     .
BPUM_3021       1761 -AC-AGAAACATCAT----ATCCCATATGATCAAGTCGAAGCAT-----C   1799

BSNT_05002___   1792 CTTCTCGCCCAAATGGAAGAGCTAGAGGCCGAAGGGAAAACAGTTATGCT   1841
                     |.||.||.|  |.||||..|||         ||||||||||.|.||||||
BPUM_3021       1800 CGTCACGAC--ACTGGAGCAGC---------AAGGGAAAACGGCTATGCT   1838

BSNT_05002___   1842 TGTATCCATTGATGGAGAAGCAGCGGGGCTAGTAGCAGTTGCAGATACGA   1891
                     |||..|.|||||.||.||||..||.||..|.||.||.||.||||||||||
BPUM_3021       1839 TGTCGCAATTGACGGCGAAGTTGCTGGTATTGTTGCGGTCGCAGATACGA   1888

BSNT_05002___   1892 TTAAGGAT-----ACGTCGCGGAAGGCTGTTGCC-------CGTCTGAAA   1929
                     |.||  ||     .||||.|  |||        |       |||||.|||
BPUM_3021       1889 TCAA--ATCATCCTCGTCTC--AAG--------CAATCAAGCGTCTAAAA   1926

BSNT_05002___   1930 GAGTTGGGTCTTGATGTCATCATGATGACAGGAG---ACAATCGCAGAAC   1976
                     |||...||..||.|.|||.|.|||||||||||.|   ||||  ||.| ||
BPUM_3021       1927 GAGCAAGGGATTCACGTCGTGATGATGACAGGCGATAACAA--GCTG-AC   1973

BSNT_05002___   1977 CGCAGAAGCCATTGCGAAGGAAGCGGGAATTGCGAATATCATTGCGGAAG   2026
                     .|||||.||.||||||||..|.|||||.||||...||||||||||.||||
BPUM_3021       1974 AGCAGAGGCGATTGCGAAACAGGCGGGCATTGATCATATCATTGCTGAAG   2023

BSNT_05002___   2027 TCCTTCCTGAACAAAAAGCGGCGGAAATCGC-CCGCTT--GCAA-----A   2068
                     ||.|.|||||..||||.||.||..|.||.|| .|||||  |.||     |
BPUM_3021       2024 TCTTGCCTGAGGAAAAGGCAGCACACATTGCGGCGCTTCAGGAAGAAGGA   2073

BSNT_05002___   2069 AAGAAGGCCGCCAGACAGCAATGGTAGGCGACGGAATTAACGATGCGCCG   2118
                     |||||.|.||||        |||||.||.||.||.||.||.|||||.|||
BPUM_3021       2074 AAGAAAGTCGCC--------ATGGTTGGAGATGGCATCAATGATGCACCG   2115

BSNT_05002___   2119 GCGCTTGCCACAGCTGACATCGGCATGGCGATTGGAACTGGCACGGACAT   2168
                     ||.|||||.|||||..|.||.||.|||||..|.|||||.||.||.||..|
BPUM_3021       2116 GCCCTTGCGACAGCGAATATTGGGATGGCAGTGGGAACAGGGACAGATGT   2165

BSNT_05002___   2169 TGCCATGGAAACAGCAGACATTACACTGATTCGCGGCGATCTAAACA-GC   2217
                     .|||||||||.|||||||.||.|||||.||....||.|||||  .|| ||
BPUM_3021       2166 CGCCATGGAAGCAGCAGATATCACACTCATGACAGGAGATCT--CCATGC   2213

BSNT_05002___   2218 -ATTGCAGACGCAATCCGCATGAGTAGATT---------GACAATGAAAA   2257
                      |||||.|     ||.|||.|||    |||         .||.||||.||
BPUM_3021       2214 GATTGCGG-----ATGCGCTTGA----ATTTAGTCAAAAAACGATGAGAA   2254

BSNT_05002___   2258 ACATTAAACAAAA-CTTATTCTGGGCGCTTGGCTATAACAGCCTCGGCAT   2306
                     |||||||.||||| ||| ||.||||||||||..|||||..|..|.||.||
BPUM_3021       2255 ACATTAAGCAAAATCTT-TTTTGGGCGCTTGCTTATAATTGTATTGGGAT   2303

BSNT_05002___   2307 CCCAATCGCAGCACTTGGATTTTTAGCACCGTGGATAGCAGGAGCAGCAA   2356
                     .||.||.||.||..||||..|..|.||.||.|||.|.|||||||||||||
BPUM_3021       2304 ACCGATAGCTGCTTTTGGGCTCCTTGCGCCATGGCTTGCAGGAGCAGCAA   2353

BSNT_05002___   2357 TGGCATTCAGCTCCGTTTCCGTTGTTCTGAATGCTCTTCGCCTGCA----   2402
                     |||||||.||||||||.||||||||..||||.||.||..|..||||    
BPUM_3021       2354 TGGCATTTAGCTCCGTGTCCGTTGTATTGAACGCGCTCAGATTGCAGCGA   2403

BSNT_05002___   2403 ---AA--------------AAGT---AAAATGA   2415
                        ||              ||||   |.|||||
BPUM_3021       2404 TTGAAGCCTGTGAGAGAGGAAGTGGCACAATGA   2436


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