Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05002 and BPUM_3021

See DNA alignment / Visit BSNT_05002 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:44
# Commandline: needle
#    -asequence pep-align/BSNT_05002___yvgX.1.24716.seq
#    -bsequence pep-align/BPUM_3021.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05002___yvgX-BPUM_3021.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05002___yvgX-BPUM_3021.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05002___yvgX
# 2: BPUM_3021
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 817
# Identity:     534/817 (65.4%)
# Similarity:   651/817 (79.7%)
# Gaps:          19/817 ( 2.3%)
# Score: 2747.0
# 
#
#=======================================

BSNT_05002___      1 MLSEQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETSNVIY     50
                        .:|||..|::||||||||.||||||.|:.||.|||||||.|||:|:|
BPUM_3021          1 ---MKKEIDFQITGMTCAACAGRIEKGLNRLEGVEDANVNLALETSHVVY     47

BSNT_05002___     51 DPAETGTAAIQEKIEKLGYHVVTEKAEFDIEGMTCAACANRIEKRLNKIE    100
                     :..:.....:::||:.|||.||.|:|||||||||||||||||||::|::.
BPUM_3021         48 EAEQLTPDDLKKKIQSLGYDVVMEQAEFDIEGMTCAACANRIEKKINRMA     97

BSNT_05002___    101 GVANAPVNFALETVTVEYNPKEASVGDLKEAVDKLGYKLKLKGEQDSEAA    150
                     ||.:..|||||||:.|.|:|.:.|..|:||||..:||.|.   |...:.|
BPUM_3021         98 GVDHGSVNFALETLQVTYHPGQTSTSDIKEAVQSIGYSLI---EPAVDEA    144

BSNT_05002___    151 AAKKKEER-----KQTARLIFSAVLSFPLLWAMVSHFTFTSFIWVPDIFL    195
                     ...||:.|     |||||.:||.:||.||||||||||:||||||:|:.|:
BPUM_3021        145 EEGKKDHRQAAIEKQTARFLFSMILSLPLLWAMVSHFSFTSFIWLPEAFM    194

BSNT_05002___    196 NPWMQFALATPVQFLIGWPFYVGAYKALRNKSANMDVLVALGTTAAYAYS    245
                     |||:|.|||.||||::|||||||||||||||||||||||||||:||:.||
BPUM_3021        195 NPWVQLALAAPVQFIVGWPFYVGAYKALRNKSANMDVLVALGTSAAFFYS    244

BSNT_05002___    246 LYLTFQSLGSHGHTDGLYYETSAILLTLILLGKLFETKAKGRSSDAIKKL    295
                     ||.:.||.....|...|||||||:|:|||:||||.|.:||||||:||:||
BPUM_3021        245 LYESIQSAVQGTHEAALYYETSAVLITLIVLGKLMEARAKGRSSEAIQKL    294

BSNT_05002___    296 MKLQAKTATVVRDGQEQIIPIDEVLVNDIVYVKPGERIPVDGEVVEGRSA    345
                     |.||||.|.:.|||:|..:||.||.|||:|:|||||::|||||:|||.:|
BPUM_3021        295 MGLQAKEAVIERDGKEMTVPISEVKVNDLVFVKPGEKVPVDGEIVEGTTA    344

BSNT_05002___    346 VDESMITGESLPVDKNPGDSVTGSTVNANGFLKIKAVNVGKDTALSHIIK    395
                     :||||||||||||||..||||.|:|:|.|||:|:||..|||:||||.||:
BPUM_3021        345 IDESMITGESLPVDKTAGDSVIGATINKNGFVKVKATKVGKETALSQIIR    394

BSNT_05002___    396 IVEEAQGSKAPIQRLADQISGIFVPIVLGIAVLTFLIWYLWAAPGDFAEA    445
                     :||:||||||||||:||||||||||||:||||||||||:.:..||:...|
BPUM_3021        395 VVEQAQGSKAPIQRMADQISGIFVPIVVGIAVLTFLIWFFFVDPGNVTAA    444

BSNT_05002___    446 ISKFIAVLVIACPCALGLATPTSIMAGSGRAAEFGILFKGGEHLEKTHRL    495
                     :..||||:|||||||||||||||||||||||||.|||||||||||.|..|
BPUM_3021        445 LETFIAVIVIACPCALGLATPTSIMAGSGRAAESGILFKGGEHLEVTQSL    494

BSNT_05002___    496 DTIVLDKTGTVTNGKPRLTDAIPFGHFEEKDLLQFAAAAETGSEHPLGEA    545
                     ||:|||||||||.|:|.|||...:.::.|..|||...:||..|||||..|
BPUM_3021        495 DTVVLDKTGTVTKGEPSLTDVQAYANWTEDALLQLVGSAEQQSEHPLARA    544

BSNT_05002___    546 IIAGVKDKGLEIPKLTRFEAKVGAGILAEAGGKSILVGTRKLMESEQVEH    595
                     |..|:|::|||:.::..|:|..|.||.|:|.|..:|||||||::...:.:
BPUM_3021        545 ITDGMKEQGLEVVEIEAFQADPGHGIEAKAAGHKLLVGTRKLLQKHHIPY    594

BSNT_05002___    596 GALLAQMEELEAEGKTVMLVSIDGEAAGLVAVADTIKDTSRKAVARLKEL    645
                     ..:.|.:..||.:|||.|||:||||.||:||||||||.:|.:|:.||||.
BPUM_3021        595 DQVEASVTTLEQQGKTAMLVAIDGEVAGIVAVADTIKSSSSQAIKRLKEQ    644

BSNT_05002___    646 GLDVIMMTGDNRRTAEAIAKEAGIANIIAEVLPEQKAAEIARLQKEGRQT    695
                     |:.|:||||||:.|||||||:|||.:||||||||:|||.||.||:||::.
BPUM_3021        645 GIHVVMMTGDNKLTAEAIAKQAGIDHIIAEVLPEEKAAHIAALQEEGKKV    694

BSNT_05002___    696 AMVGDGINDAPALATADIGMAIGTGTDIAMETADITLIRGDLNSIADAIR    745
                     ||||||||||||||||:||||:|||||:|||.|||||:.|||::||||:.
BPUM_3021        695 AMVGDGINDAPALATANIGMAVGTGTDVAMEAADITLMTGDLHAIADALE    744

BSNT_05002___    746 MSRLTMKNIKQNLFWALGYNSLGIPIAALGFLAPWIAGAAMAFSSVSVVL    795
                     .|:.||:||||||||||.||.:||||||.|.||||:||||||||||||||
BPUM_3021        745 FSQKTMRNIKQNLFWALAYNCIGIPIAAFGLLAPWLAGAAMAFSSVSVVL    794

BSNT_05002___    796 NALRLQKVK--------    804
                     ||||||::|        
BPUM_3021        795 NALRLQRLKPVREEVAQ    811


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

Amino acid alignment: BSNT_05002 and BPUM_3021

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
