Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05131 and BPUM_3054
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:47
# Commandline: needle
# -asequence dna-align/BSNT_05131___pgm.1.24716.seq
# -bsequence dna-align/BPUM_3054___gpmI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05131___pgm-BPUM_3054___gpmI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05131___pgm-BPUM_3054___gpmI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05131___pgm
# 2: BPUM_3054___gpmI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1544
# Identity: 1206/1544 (78.1%)
# Similarity: 1206/1544 (78.1%)
# Gaps: 16/1544 ( 1.0%)
# Score: 4620.0
#
#
#=======================================
BSNT_05131___ 1 ATGAGTAAAAAACCAGCTGCACTCATCATTCTT-GATGGGTTCGGATTAC 49
||||||||.||||||||||||.|.|||| |||| |||||.|||||.|||.
BPUM_3054___g 1 ATGAGTAAGAAACCAGCTGCATTAATCA-TCTTAGATGGATTCGGTTTAA 49
BSNT_05131___ 50 GTAACGAAACAGTAGGGAACGCAGTCGCTTTAGCGAAAAAACCGAATTTT 99
|...|||||||||.||.|||||.||.||...|||.||.||||||||.||.
BPUM_3054___g 50 GAGGCGAAACAGTCGGTAACGCTGTTGCCCAAGCAAAGAAACCGAACTTC 99
BSNT_05131___ 100 GACCGCTATTGGAACCAGTATCCTCATCAAACATTGACTGCTTCAGGCGA 149
||||||||.||||||.|.|..||.||||||||.||.||.||||||||.||
BPUM_3054___g 100 GACCGCTACTGGAACGAATTCCCGCATCAAACCTTAACGGCTTCAGGTGA 149
BSNT_05131___ 150 GGCTGTAGGTCTTCCTGAAGGGCAAATGGGGAACTCCGAAGTAGGTCACT 199
|||.|||||.||.||..||||.||||||||||||||.|||||.||.||.|
BPUM_3054___g 150 GGCAGTAGGCCTCCCGCAAGGTCAAATGGGGAACTCTGAAGTTGGGCATT 199
BSNT_05131___ 200 TAAATATCGGTGCGGGACGTATTGTGTACCAAAGCTTAACACGCGTAAAT 249
|.||.||||||||.|||||.||||||||.||||||||||||.|.||.|||
BPUM_3054___g 200 TGAACATCGGTGCAGGACGCATTGTGTATCAAAGCTTAACAAGAGTGAAT 249
BSNT_05131___ 250 GTTGCCATTCGTGAAGGAGAGTTCGAACGCAATCAAACATTCCTTGACGC 299
||||||||||||||.||.||.||.||....|||.||||.|||||.||.||
BPUM_3054___g 250 GTTGCCATTCGTGATGGGGAATTTGAGAAAAATGAAACGTTCCTAGAGGC 299
BSNT_05131___ 300 GATCAGCAACGCGAAAGAAAACAACAAAGCCTTGCACCTGTTCGGTCTTT 349
.||.|...|.||.|||||.||..||||.|||.|.||..|.|||||||||.
BPUM_3054___g 300 AATGACTTATGCAAAAGAGAATGACAAGGCCCTTCATTTATTCGGTCTTC 349
BSNT_05131___ 350 TATCTGACGGAGGCGTGCACAGCCATATCAATCATTTATTCGCACTGTTA 399
|.||.|||||.||.|||||||||||.|||.|.|||.|.||.||..||.|.
BPUM_3054___g 350 TGTCAGACGGCGGTGTGCACAGCCACATCCAGCATCTTTTTGCCTTGCTG 399
BSNT_05131___ 400 AAGCTTGCGAAAAAAGAAGGGCTGACAGAGGTTTATATCCATGGCTTCCT 449
||.||.||||||||||||||..|.|||.|.||.||.||.||.||||||.|
BPUM_3054___g 400 AAACTAGCGAAAAAAGAAGGCTTAACAAAAGTATACATTCACGGCTTCTT 449
BSNT_05131___ 450 TGACGGCCGTGATGTAGGTCCGCAGACAGCGAAAACGTACATCAACCAG- 498
.|||||.||||||||.||||...|||||||.|||..||||.|.||.|||
BPUM_3054___g 450 GGACGGACGTGATGTTGGTCAAAAGACAGCTAAAGTGTACTTAAAACAGC 499
BSNT_05131___ 499 TTGAACGATCAAATCAAGGAAATCGGTGTAGGTGAAATCGCCAGCA-TTT 547
||||| ||.||||||||.|||||||||||.||.|||.| |.||.|| |||
BPUM_3054___g 500 TTGAA-GAACAAATCAAAGAAATCGGTGTCGGAGAAGT-GGCAACACTTT 547
BSNT_05131___ 548 CCGGACGTTACTACTCTATGGACCGCGACAAACGCTGGGACCGTGTAGAA 597
|.|||||.||.|||||.||||||||.||||||||||||||.|||||.||.
BPUM_3054___g 548 CTGGACGCTATTACTCAATGGACCGTGACAAACGCTGGGATCGTGTGGAG 597
BSNT_05131___ 598 AAAGCGTACCGCGCAATGGCGTACGGCGAAGGCCCATCTTACCGCAGCGC 647
|||||.||.|||||.||||||||.||.|||||||||..|||.|..|.|..
BPUM_3054___g 598 AAAGCATATCGCGCGATGGCGTATGGTGAAGGCCCAAGTTATCAAAACAT 647
BSNT_05131___ 648 CCTGGATGTTGTTGATGATTCATATGCAAATGGTATCTACGATGAATTCG 697
|...|||||.||||||||.||.||||.||||||.||||||||||||||||
BPUM_3054___g 648 CTATGATGTCGTTGATGACTCCTATGAAAATGGAATCTACGATGAATTCG 697
BSNT_05131___ 698 TGATTCCATCTGTCATCACAAAAGAAAACGGTGAGCCTGTTGCGAAAATC 747
|.|||||||||||||||||.|.||||||.||||||||.|||||.|||.|.
BPUM_3054___g 698 TTATTCCATCTGTCATCACGAGAGAAAATGGTGAGCCAGTTGCCAAAGTA 747
BSNT_05131___ 748 CAAGACGGCGATTCTGTGATTTTCTATAATTTCAGACCGGACCGCGCCAT 797
.|.||||||||||||||||||||||||||.|||.|.||.|||||.||.||
BPUM_3054___g 748 AACGACGGCGATTCTGTGATTTTCTATAACTTCCGCCCAGACCGTGCGAT 797
BSNT_05131___ 798 CCAGATTTCCAACACGTTCACAAACAAAGACTTCCGTGACTTCGACCGCG 847
|||.|||||.|||||.||||||||..||||.|||||....||.||.||||
BPUM_3054___g 798 CCAAATTTCGAACACTTTCACAAATGAAGATTTCCGCTCGTTTGATCGCG 847
BSNT_05131___ 848 GCGAGAA--TTATCCAAAGAACCTGTATTTCGTCTGCCTGACTCACTTCA 895
||||| ..||||.||.||..|..|.|||||||||.|.||.|||||||
BPUM_3054___g 848 --GAGAAGCACATCCGAAAAATTTACACTTCGTCTGCTTCACACACTTCA 895
BSNT_05131___ 896 GTGAAACAGTTGACGGCTATGTAGCGTTTAAACCGATAAATCTTGATAAC 945
|||||||.|||||.||||||||.||.||.|||||..|.|||.|.||||||
BPUM_3054___g 896 GTGAAACGGTTGATGGCTATGTTGCCTTCAAACCAGTGAATTTGGATAAC 945
BSNT_05131___ 946 ACAGTCGGAGAAGTATTATCTCAGCACGGGTTAAAACAGCTTCGAATTGC 995
|||||.||||||||..||.|.||..|.||.||.||||||||.||.|||||
BPUM_3054___g 946 ACAGTAGGAGAAGTGCTAGCGCAAAATGGATTGAAACAGCTGCGGATTGC 995
BSNT_05131___ 996 AGAAACTGAAAAGTATCCGCACGTCACGTTCTTTATGAGCGGCGGCCGTG 1045
.|||||.||.||.|||||.|||||.|||||||||||||||||.||.||||
BPUM_3054___g 996 TGAAACAGAGAAATATCCTCACGTGACGTTCTTTATGAGCGGTGGACGTG 1045
BSNT_05131___ 1046 AAGCTGAATTCCCGGGTGAAGAGCGTATTCTCATCAACTCGCCTAAAGTT 1095
|||..|||||.||.||||||||.|||||..|.|||||.||.||..|.||.
BPUM_3054___g 1046 AAGAAGAATTTCCTGGTGAAGACCGTATCTTGATCAATTCTCCAGATGTG 1095
BSNT_05131___ 1096 GCAACGTATGACTTGAAGCCTGAGATGAGTGCGTATGAAGTGAAAGACGC 1145
|||||.||||||.|.|||||.||.|||||.||.||||||||.||.||.||
BPUM_3054___g 1096 GCAACCTATGACCTCAAGCCAGAAATGAGCGCTTATGAAGTAAAGGATGC 1145
BSNT_05131___ 1146 GCTTGTCAAAGAAATTGAAGCTGACAAGCATGACGCGATCATTCTT-AAC 1194
.|||||...|||.||..|.||||||||||||||.||||||| |||| |||
BPUM_3054___g 1146 ACTTGTTGCAGACATCAATGCTGACAAGCATGATGCGATCA-TCTTGAAC 1194
BSNT_05131___ 1195 TTCGCAAACCCTGATATGGTCGGCCACTCCGGAATGGTTGAACCAACAAT 1244
||.||.|||||.||||||||.||.||.||.||.|||.|.||.||||||||
BPUM_3054___g 1195 TTTGCTAACCCGGATATGGTTGGTCATTCAGGTATGCTCGAGCCAACAAT 1244
BSNT_05131___ 1245 TAAAGCAATTGAAGCAGTGGACGAATGCTTGGGCGAAGTCGTTGACGCGA 1294
.|||||.|||||||||||.||.||.|||||.||.|..||.||.|||||.|
BPUM_3054___g 1245 CAAAGCCATTGAAGCAGTAGATGAGTGCTTAGGAGCTGTTGTCGACGCAA 1294
BSNT_05131___ 1295 TCCTTGCTAAAGGCGGACACGCTATCATTACCGCTGATCACGGTAATGCT 1344
||||.||.|||||||||||.||.|||||.||.||.||.||||||||.||.
BPUM_3054___g 1295 TCCTAGCAAAAGGCGGACATGCCATCATCACGGCAGACCACGGTAACGCA 1344
BSNT_05131___ 1345 GACATTCTGATTACAGAATCAGGCGAACCGCACACTGCGCATACAACAAA 1394
|||.|.||.|||||.|||..|||..|.|||||.|||||.|||||||||||
BPUM_3054___g 1345 GACGTGCTTATTACCGAAGAAGGAAAGCCGCATACTGCACATACAACAAA 1394
BSNT_05131___ 1395 CCCAGTCCCTGTGATTGTAACGAAAGAA--GGCATTACGCTGCGTGAAGG 1442
|||.||.||.|||||.|||||||||.|| |||| |||||..|.|||||
BPUM_3054___g 1395 CCCTGTTCCAGTGATCGTAACGAAAAAAGGGGCA--ACGCTTAGAGAAGG 1442
BSNT_05131___ 1443 CGGAATCCTAGGCGACCTTGCACCAACGTTATTAGACCTTCTTGGTGTTG 1492
|||.||.||||.|||.||..|.||||||.|.||||||.|.||||||||||
BPUM_3054___g 1443 CGGTATTCTAGCCGATCTATCTCCAACGCTTTTAGACTTACTTGGTGTTG 1492
BSNT_05131___ 1493 AAAAACCGAAAGAAATGACAGGAACATCTTTAATTCAAAAATAA 1536
|||||||.|||||.||||||||||||||.||.|||||.||||||
BPUM_3054___g 1493 AAAAACCAAAAGAGATGACAGGAACATCATTGATTCAGAAATAA 1536
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