Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05193 and BPUM_3083

See Amino acid alignment / Visit BSNT_05193 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:51
# Commandline: needle
#    -asequence dna-align/BSNT_05193___yveK.1.24716.seq
#    -bsequence dna-align/BPUM_3083.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05193___yveK-BPUM_3083.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05193___yveK-BPUM_3083.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05193___yveK
# 2: BPUM_3083
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 823
# Identity:     447/823 (54.3%)
# Similarity:   447/823 (54.3%)
# Gaps:         209/823 (25.4%)
# Score: 1010.0
# 
#
#=======================================

BSNT_05193___      1 ATGAATGAGAATATGAGTTTCAAAGAATTATATGCGATTGTCA-GACACA     49
                     ||||||||||||||..||||.||..|..|.|.|.|   ||||| .|.|.|
BPUM_3083          1 ATGAATGAGAATATAGGTTTTAAGCAGCTGTTTTC---TGTCATTAAAGA     47

BSNT_05193___     50 GA---------TTCGTG---CTGATTCTGCTCATCACAATCGGC--GTCA     85
                     ||         ||| ||   ||||||.|.||.|||..||..|||  .|||
BPUM_3083         48 GAAAATGGCCCTTC-TGATCCTGATTGTCCTGATCGTAACGGGCATTTCA     96

BSNT_05193___     86 CCCTTATTATGGGTTTTGTGCAATTTAAGGTCATTTCACCGAC------C    129
                     .|| ||.|||..|||.|               ||.|| .||||      .
BPUM_3083         97 GCC-TACTATCAGTTCT---------------ATGTC-TCGACTCCTGTA    129

BSNT_05193___    130 TACCAGGCGTCGACACAGGTGCTGGTTCAT----GAATCA--GACGGTGA    173
                     ||.|||||..|.||.||..|.||.||||||    |.|.||  ||||...|
BPUM_3083        130 TATCAGGCAACCACTCAAATTCTTGTTCATAAACGCAGCAATGACGCACA    179

BSNT_05193___    174 AGAAAACTCGAATCTCAGTGACATCCAGCGAAATCTTCAGTATAGCAGCA    223
                     ||.|||||      |.|..||.||.|||...||.|||||.||||    ||
BPUM_3083        180 AGCAAACT------TAAACGATATTCAGATGAACCTTCAATATA----CA    219

BSNT_05193___    224 CGTTCCAATCGA---TTATGAAAAGCACTGC---CTTGATGGAAGAAGTT    267
                     |||.||..||.|   ||||.||||  |.|.|   |.|.||.|||.||||.
BPUM_3083        220 CGTACCTTTCAAGTTTTATTAAAA--AGTCCAATCGTCATTGAAAAAGTA    267

BSNT_05193___    268 AAGGCGGAATTGCACCTATCTGAATCGGCTTCCTCGCTGAAAGG------    311
                     ||.|....|.|..||||..|.|||||.|||         .||||      
BPUM_3083        268 AAAGAAACACTCAACCTCACAGAATCAGCT---------GAAGGATTAAA    308

BSNT_05193___    312 ----AAAAGTGGTTACCAGCAGT---GAAAATGAATCAGAAATCATTAAC    354
                         ||||    ||.|||..|||   ||||||||.|||||..|||||||.
BPUM_3083        309 ACACAAAA----TTGCCACAAGTACAGAAAATGAGTCAGAGGTCATTAAT    354

BSNT_05193___    355 GTTGCCGTCCAGGATCACGATCCGGCGAAAGCGGCTGAGATTGCGAACAC    404
                     .||.|.||.||.|||.|.||||..||.||.||.|.||..||||||||   
BPUM_3083        355 ATTTCTGTACAAGATGAGGATCGCGCAAAGGCAGTTGCCATTGCGAA---    401

BSNT_05193___    405 GTTAGTG-AACA-AGTT--TG-AAAAAGAAGTAGATGAAAGA----ATGA    445
                       ||.|| |||| ||.|  || ||.|||||    ||.|||.|    ||||
BPUM_3083        402 --TACTGCAACAGAGGTGCTGCAAGAAGAA----ATCAAAAAAACCATGA    445

BSNT_05193___    446 ATGTACAAGGCGTACATATATTATCAGAGGCGA-----------AGGCTT    484
                     ||.|..|..||.|..||.|.||.||.||.||.|           |.|.||
BPUM_3083        446 ATATGGATCGCATTAATGTTTTGTCTGAAGCCAAACTGTCCAATACGATT    495

BSNT_05193___    485 CTGAAAGCCCGATGA--TCAAGCCGGCCAGGCTGCGAA---------ATA    523
                     ||        .||||  ||||              |||         |||
BPUM_3083        496 CT--------TATGAATTCAA--------------GAAAATTCGTTCATA    523

BSNT_05193___    524 TGGTCATGGCTTTTGGCGCTGCTGTCATGGGCGGCATTACACTGGCATTT    573
                     |.||..||||..|.|||||..||.|..|.||.||..|.|||||  |||||
BPUM_3083        524 TCGTACTGGCACTAGGCGCCTCTTTATTAGGGGGGGTAACACT--CATTT    571

BSNT_05193___    574 --TTTCTGCATTTTCTCGATGATACTTGCAAAA-GTGCACGGCAGCTCAG    620
                       ||..||.|.||.||||||||||| ||.|||| |..|||..||..|.||
BPUM_3083        572 TCTTAATGAACTTACTCGATGATAC-TGTAAAACGAACACATCAAATAAG    620

BSNT_05193___    621 CGAGAGA-ACCGGATTGCCAT-GCTTAGGCTCCGTTCCT----GATGTCC    664
                     .|| ||| |.|||||||||.| || |.|||..|||  ||    ||||   
BPUM_3083        621 AGA-AGAGATCGGATTGCCGTCGC-TCGGCAGCGT--CTATCAGATG---    663

BSNT_05193___    665 ACAAAGGGCGGAATCGCGGGATAAAA--------CATTTCG-------GG    699
                      ||   |||.||...|.|||..||||        ||.|.||       ||
BPUM_3083        664 -CA---GGCAGACAGGAGGGCAAAAAAAGACAAGCAGTCCGTCATAACGG    709

BSNT_05193___    700 GAG----------TGA-------    705
                     |||          |||       
BPUM_3083        710 GAGGACAGAACATTGATCTTTAA    732


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