Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05293 and BPUM_3115
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:53
# Commandline: needle
# -asequence dna-align/BSNT_05293___yvcJ.1.24716.seq
# -bsequence dna-align/BPUM_3115.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05293___yvcJ-BPUM_3115.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05293___yvcJ-BPUM_3115.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05293___yvcJ
# 2: BPUM_3115
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 931
# Identity: 695/931 (74.7%)
# Similarity: 695/931 (74.7%)
# Gaps: 50/931 ( 5.4%)
# Score: 2649.5
#
#
#=======================================
BSNT_05293___ 1 --------------------ATGAGTGTTAG------TGAAT---CAC-- 19
|.|||.|..|| ||||| |||
BPUM_3115 1 ATGAACCGTTTTTATAAAGAAGGAGAGGAAGCAGGCATGAATACACACAA 50
BSNT_05293___ 20 -----ATGATATTCAGCTTGTCATTATAACCGGAATGTCGGGAGCGGGGA 64
|.||||||||||||||.|||||.||.||||||||.||.|||||||
BPUM_3115 51 ACAAGAAGATATTCAGCTTGTGATTATTACTGGAATGTCAGGTGCGGGGA 100
BSNT_05293___ 65 AAACTGTCGCGATTCAAAGCTTTGAAGATCTCGGCTATTTCTGCGTCGAT 114
||||.||.||.||||||||||||||||||.|.||.||.|||||.||.|||
BPUM_3115 101 AAACCGTTGCCATTCAAAGCTTTGAAGATTTAGGGTACTTCTGTGTAGAT 150
BSNT_05293___ 115 AATCTT-CCGCCTTCATTGCTTCCGAAGTTTTTAGAGCTGATGAAGGAAT 163
|| ||| |||||.|||.|..|.||.||.||..||||.||.||||||||||
BPUM_3115 151 AA-CTTGCCGCCATCACTTTTACCTAAATTCCTAGAACTCATGAAGGAAT 199
BSNT_05293___ 164 CAAATTCGAAAATGAGCAAAGTTGCGCTCGTGATGGATCTGCGTGGCCGC 213
|.||||||||.||||||||.|||||.||.|||||||||.||||.||.||.
BPUM_3115 200 CGAATTCGAAGATGAGCAAGGTTGCCCTTGTGATGGATTTGCGAGGACGT 249
BSNT_05293___ 214 GAATTTTTTGACCGGCTGATTGAAGCGCTGGATGAAATGGCCGAAAATCC 263
|||||.||||||.|..|.||||.|||..|.|||||||||...||...|..
BPUM_3115 250 GAATTCTTTGACAGCTTAATTGCAGCCTTAGATGAAATGAGTGATCTTGG 299
BSNT_05293___ 264 GTGGATCACACCGCGAATTTTATTCCTGGACGCGAAGGATTCCATTCTCG 313
.|||||||||||..|.||.|||||.||.||.||.||.|||....|.||.|
BPUM_3115 300 TTGGATCACACCAAGGATATTATTTCTAGATGCAAACGATAAGGTGCTTG 349
BSNT_05293___ 314 TCACAAGATATAAAGAAACGAGACGCTCGCATCCGCTGGCAGCGACTGGC 363
||.|||||||.||||||||||||||.||||||||.||.||..|.||.||.
BPUM_3115 350 TCTCAAGATACAAAGAAACGAGACGTTCGCATCCTCTTGCGACAACAGGT 399
BSNT_05293___ 364 CTGCCGCTTGAAGGCATCGCGCTGGAACGAGAGCTGCTTGAGGAATTAAA 413
.|||||||.|||||.||||||.|||||||.||.|||.|.||.||.|||||
BPUM_3115 400 TTGCCGCTCGAAGGAATCGCGATGGAACGCGATCTGTTAGAAGAGTTAAA 449
BSNT_05293___ 414 AGGCCGCTCTCAAATCATTTACGATACGTCTGACATGAAGCC------GC 457
||||||..|||||||.||||..|||||.||.||..|.||.|| ||
BPUM_3115 450 AGGCCGAGCTCAAATGATTTTTGATACATCGGATTTAAAACCAAAACAGC 499
BSNT_05293___ 458 GTGATTTGCGTGAAAAAATCGTGAAGCACTTTGCGACAAACCAAGGAGAG 507
|.||.||||||||.||...|||||||||.||||.|||||||.||
BPUM_3115 500 ------TTCGAGAAAAAATTGTCGCGCACTTTGCCACAAGCCAAGGACAG 543
BSNT_05293___ 508 ACATTTACCGTAAATGTGATGTCATTTGGTTTTAAATACGGTATTCCAAT 557
...|||||.||.|||||||||||.||.|||||||||||||||.|.||.||
BPUM_3115 544 GTGTTTACAGTGAATGTGATGTCCTTCGGTTTTAAATACGGTCTGCCGAT 593
BSNT_05293___ 558 TGATGCAGATCTCGTCTTTGATGTCAGATTTTTGCCGAATCCGTACTATA 607
||||||.|||||.||.||||||||.|||||..||||||||||.|||||||
BPUM_3115 594 TGATGCTGATCTTGTATTTGATGTAAGATTCCTGCCGAATCCTTACTATA 643
BSNT_05293___ 608 TCGAAAGCATGCGGCCGCTGACTGGCAAGGATAAAGAGGTTTCCTCTTAC 657
|.||.||||||||.||.|.||||||.||.|||.||||.||...|||.||.
BPUM_3115 644 TTGAGAGCATGCGTCCACAGACTGGAAACGATGAAGAAGTGCGCTCCTAT 693
BSNT_05293___ 658 GTCATGAAGTGGAATGAAACACAAAAGTTCAATGAGAAATTAATTGATCT 707
||.|||||.||||..||.||||||||.||||..|||||||||||||||||
BPUM_3115 694 GTAATGAAATGGAGCGAGACACAAAAATTCACAGAGAAATTAATTGATCT 743
BSNT_05293___ 708 GCTGAGCTTTATGCTTCCATCTTATAAAAGAGAAGGAAAAAGCCAGGTTG 757
.||.||||||||||||||.||.||||||.|.|||||||||||.|||.|||
BPUM_3115 744 TCTCAGCTTTATGCTTCCGTCCTATAAACGGGAAGGAAAAAGTCAGCTTG 793
BSNT_05293___ 758 TCATTGCGATCGGCTGCACAGGGGGCCAGCACCGCTCTGTGACATTAGCC 807
|.||.||.||.|||||.|||||.||.||||||||.||.||||||.||||.
BPUM_3115 794 TGATCGCTATTGGCTGTACAGGCGGACAGCACCGATCAGTGACACTAGCG 843
BSNT_05293___ 808 GAGAATTTAGCTGATTATTTCAAAAAGGATTACTATACTCATGTTACTCA 857
.|..|.|||.|.||.|||||.|||||.||.||.||.||||||||.|||||
BPUM_3115 844 AACTACTTATCGGAGTATTTTAAAAATGACTATTACACTCATGTCACTCA 893
BSNT_05293___ 858 CCGGGACATTGAAAAGAGAAGCCGGAAATAA 888
||||||||||||||||||||||.|.|||||.
BPUM_3115 894 CCGGGACATTGAAAAGAGAAGCAGAAAATAG 924
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