Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_05293 and BPUM_3115

See DNA alignment / Visit BSNT_05293 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:53
# Commandline: needle
#    -asequence pep-align/BSNT_05293___yvcJ.1.24716.seq
#    -bsequence pep-align/BPUM_3115.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05293___yvcJ-BPUM_3115.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05293___yvcJ-BPUM_3115.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05293___yvcJ
# 2: BPUM_3115
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 307
# Identity:     253/307 (82.4%)
# Similarity:   274/307 (89.3%)
# Gaps:          12/307 ( 3.9%)
# Score: 1327.0
# 
#
#=======================================

BSNT_05293___      1 ------------MSVSESHDIQLVIITGMSGAGKTVAIQSFEDLGYFCVD     38
                                 |:..:..|||||||||||||||||||||||||||||||
BPUM_3115          1 MNRFYKEGEEAGMNTHKQEDIQLVIITGMSGAGKTVAIQSFEDLGYFCVD     50

BSNT_05293___     39 NLPPSLLPKFLELMKESNSKMSKVALVMDLRGREFFDRLIEALDEMAENP     88
                     |||||||||||||||||||||||||||||||||||||.||.|||||::..
BPUM_3115         51 NLPPSLLPKFLELMKESNSKMSKVALVMDLRGREFFDSLIAALDEMSDLG    100

BSNT_05293___     89 WITPRILFLDAKDSILVTRYKETRRSHPLAATGLPLEGIALERELLEELK    138
                     |||||||||||.|.:||:||||||||||||.|||||||||:||:||||||
BPUM_3115        101 WITPRILFLDANDKVLVSRYKETRRSHPLATTGLPLEGIAMERDLLEELK    150

BSNT_05293___    139 GRSQIIYDTSDMKPRDLREKIVKHFATNQGETFTVNVMSFGFKYGIPIDA    188
                     ||:|:|:||||:||:.||||||.||||:||:.|||||||||||||:||||
BPUM_3115        151 GRAQMIFDTSDLKPKQLREKIVAHFATSQGQVFTVNVMSFGFKYGLPIDA    200

BSNT_05293___    189 DLVFDVRFLPNPYYIESMRPLTGKDKEVSSYVMKWNETQKFNEKLIDLLS    238
                     ||||||||||||||||||||.||.|:||.||||||:|||||.||||||||
BPUM_3115        201 DLVFDVRFLPNPYYIESMRPQTGNDEEVRSYVMKWSETQKFTEKLIDLLS    250

BSNT_05293___    239 FMLPSYKREGKSQVVIAIGCTGGQHRSVTLAENLADYFKKDYYTHVTHRD    288
                     |||||||||||||:|||||||||||||||||..|::|||.||||||||||
BPUM_3115        251 FMLPSYKREGKSQLVIAIGCTGGQHRSVTLANYLSEYFKNDYYTHVTHRD    300

BSNT_05293___    289 IEKRSRK    295
                     |||||||
BPUM_3115        301 IEKRSRK    307


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.