Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05323 and BPUM_3133
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:55
# Commandline: needle
# -asequence dna-align/BSNT_05323.1.24716.seq
# -bsequence dna-align/BPUM_3133.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05323-BPUM_3133.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05323-BPUM_3133.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05323
# 2: BPUM_3133
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 536
# Identity: 219/536 (40.9%)
# Similarity: 219/536 (40.9%)
# Gaps: 241/536 (45.0%)
# Score: 773.0
#
#
#=======================================
BSNT_05323 1 GTGAGAAAAACAGATCGTCATCCGGTCTCGGGGGCCAACTCACTGTGGCA 50
.|||||||||||||||||.||||.||....||||.|||.||..|..|.||
BPUM_3133 1 TTGAGAAAAACAGATCGTTATCCTGTAAAAGGGGTCAATTCGTTACGACA 50
BSNT_05323 51 TGTCTATCAAACGGTACCTTTTTTAAAGGTCGTCAAAAATTTCATTGTCA 100
.||.||||..|||||.||||||||.||.||.||.|||||.||.|||.|||
BPUM_3133 51 AGTGTATCGGACGGTTCCTTTTTTCAAAGTGGTGAAAAACTTTATTTTCA 100
BSNT_05323 101 TTCAAATTGCGAGATATACGCCGTTTATAGGGATGAAAAACTGGCTGTAC 150
|||||||.||..|.||.|||||.|||||.||.||||||||.|||.|.|||
BPUM_3133 101 TTCAAATCGCACGGTACACGCCCTTTATGGGAATGAAAAATTGGATATAC 150
BSNT_05323 151 CGTACATTTCTGCGGATGAAGGTTGGAAATCAGACATCCTTTGCCCTCAT 200
.|.||.|||||.||.||||||||.||..|..|.|||.|.||||||.|.||
BPUM_3133 151 AGAACCTTTCTTCGTATGAAGGTCGGCGAAGATACAGCGTTTGCCTTAAT 200
BSNT_05323 201 GGTGATGCCAGATATCATGTTTCCGGAAAAGATCTCAGTCGGAACAAATA 250
|||.|||...|||.||||||||||.||.||.|||..||||||...||||.
BPUM_3133 201 GGTCATGGTGGATCTCATGTTTCCTGAGAAAATCAAAGTCGGTCGAAATT 250
BSNT_05323 251 CAATCATCGGGTACAATACGACCATTCTGGCCCATGAGTATTCCGGATCG 300
|..|.||.||.||.||.||.||||||.||.||||||||||||
BPUM_3133 251 CGGTGATTGGCTATAACACCACCATTTTGACCCATGAGTATT-------- 292
BSNT_05323 301 GCACAGTTCTGA-------------------------------------- 312
|||
BPUM_3133 293 ---------TGATTAAAGAATATAGACTTGGGGAAGTCTATATTGGTGAT 333
BSNT_05323 312 -------------------------------------------------- 312
BPUM_3133 334 GAAGTCTTAATTGGAGCCAATTCCACCATTTTACCTGGTGTGACCATTGG 383
BSNT_05323 312 -------------------------------------------------- 312
BPUM_3133 384 GGATGGAGCGATCGTGTCAGCTGGTACACTTGTTCATAAGGATGTTCCAG 433
BSNT_05323 312 -------------------------------------------------- 312
BPUM_3133 434 CAGGTTCATTTGTTGGAGGAAATCCAATGCGCATGATTTATACGAAAGAA 483
BSNT_05323 312 ------------------------------------ 312
BPUM_3133 484 GAAATGAAAGTACGTCAATCTAAGTCTGCTGAGTAG 519
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