Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05374 and BPUM_3182
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:00
# Commandline: needle
# -asequence dna-align/BSNT_05374___fliT.1.24716.seq
# -bsequence dna-align/BPUM_3182___fliT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05374___fliT-BPUM_3182___fliT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05374___fliT-BPUM_3182___fliT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05374___fliT
# 2: BPUM_3182___fliT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 405
# Identity: 213/405 (52.6%)
# Similarity: 213/405 (52.6%)
# Gaps: 126/405 (31.1%)
# Score: 472.0
#
#
#=======================================
BSNT_05374___ 1 ATGAATAACATAGATCAACT--ATACACTGAGACGAAGAGTATGCTGTCA 48
||||.||...|.||.||.|| || ||| ||
BPUM_3182___f 1 ATGAGTATTGTGGACCAGCTGCAT-------GAC--------------CA 29
BSNT_05374___ 49 CACATACAAAAT-------------ACG------CCGGAAAGCGATGAGC 79
.||||..||||| ||| |||.||||.||| |.|
BPUM_3182___f 30 AACATTAAAAATGGCAGCCGAAATAACGGCAAATCCGCAAAGTGAT-ACC 78
BSNT_05374___ 80 TTTTAAAACAAATTGAAGACTTTG-TGGCTAAACGGTCTGAACTG----- 123
|| ..|||||||||||| ||.|| |.|.||.||
BPUM_3182___f 79 TT--------GGTTGAAGACTTTGATGCCT------TTTTAATTGAGAGA 114
BSNT_05374___ 124 -----ATTCAGGAGATATCT----------CTG-CCGCTTTC-AGAAGAA 156
|||.|.||||.||.| ||| ||| .|| ||||.||
BPUM_3182___f 115 GACGAATTAATGAGAGATATTCAGCATGAGCTGACCG--ATCAAGAAAAA 162
BSNT_05374___ 157 GAGCGAAAGCAGATGAAGCTAGTGCTGACATGGGATCAGCTTATTGTGAA 206
|| ..|||.|| |.|||..|| |.|..|| ||||||.|..||.|.|||
BPUM_3182___f 163 GA-AAAAATCA-AAGAAATTA-TCCAAAC---GGATCAACAGATGGCGAA 206
BSNT_05374___ 207 GGAAATGGAACGACTGAAGCA-------GTCAATCGCAGCAGAACTTCAG 249
|.||.| |||| .|||..|| .|||| ||||||..||||
BPUM_3182___f 207 GCAATT--AACG-GTGATCCAAAATGGGATCAA----AGCAGATATTCA- 248
BSNT_05374___ 250 CAG------ATGAAAAGAAAACGTGTGATGCATAC----GACGTATTTAA 289
|| |..||||||||||| |.|| ||..|||..||
BPUM_3182___f 249 -AGCCATTCAAAAAAAGAAAACG--------AAACAGCTGAATTATCAAA 289
BSNT_05374___ 290 ACCCTTATAACAAC--ATTACGATTGACGGCACATATTATGACAAGCGTA 337
|.|| |||.||.| ||.||||.|||||||..||||||.||.||.||.|
BPUM_3182___f 290 ATCC--ATACCAGCCTATGACGAGTGACGGCGTATATTACGATAAACGGA 337
BSNT_05374___ 338 AATAG 342
||||.
BPUM_3182___f 338 AATAA 342
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