Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05384 and BPUM_3189

See Amino acid alignment / Visit BSNT_05384 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:00
# Commandline: needle
#    -asequence dna-align/BSNT_05384___flgL.1.24716.seq
#    -bsequence dna-align/BPUM_3189___flgL.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05384___flgL-BPUM_3189___flgL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05384___flgL-BPUM_3189___flgL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05384___flgL
# 2: BPUM_3189___flgL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1017
# Identity:     595/1017 (58.5%)
# Similarity:   595/1017 (58.5%)
# Gaps:         225/1017 (22.1%)
# Score: 1476.0
# 
#
#=======================================

BSNT_05384___      1 ATGAGAGTAACACAAGGCATGATACAGCAAAACTCACTGAGATATATCGG     50
                     |||.||||.||||||||.|||||....|||||||||||..|..||||   
BPUM_3189___f      1 ATGCGAGTCACACAAGGTATGATTTCTCAAAACTCACTTCGTAATAT---     47

BSNT_05384___     51 TTCGAGCTACTCGAAGCT-GGATAAACT---------------CCAGTCG     84
                            ||.|..|||.| .||.|||||               .|||.|.
BPUM_3189___f     48 -------TAGTAAAAGTTATGAAAAACTTTCTAAAATAAATGAGCAGGCA     90

BSNT_05384___     85 CAGATTTCTTCAGGGAAAAAAATCTCAAAAGCTTCCGACGATCCTGTAGT    134
                     ||.|      ||||||.|....||.|||||.|.||.||.||||||||.|.
BPUM_3189___f     91 CAAA------CAGGGAGACGTTTCACAAAAACGTCTGATGATCCTGTTGC    134

BSNT_05384___    135 AGCAATGAAAAG-CTTAAAGTATAATAC-GCAACTGTCTC-AAGTG----    177
                     ||||.|.||||| |||.|| ||||.||| ||.| |||.|| ||.||    
BPUM_3189___f    135 AGCAGTAAAAAGCCTTCAA-TATAGTACTGCCA-TGTTTCGAAATGAACA    182

BSNT_05384___    178 -CAGCAGTACAA--------AAGCAATGCCTCTCAAGCCTTTACCTGGCT    218
                      .|.|||.|.||        |||||        |||      |.||||.|
BPUM_3189___f    183 ATATCAGAATAACTTAAATGAAGCA--------CAA------AACTGGAT    218

BSNT_05384___    219 CGAAAACA-CAGAAACAAACATTACAGAAGGAATTGACATCTTGTCAAAG    267
                     .| |.||| |.|||||||...|.||.|||...|||||.||..|||||||.
BPUM_3189___f    219 TG-ATACATCTGAAACAAGTGTCACTGAAATCATTGATATTATGTCAAAT    267

BSNT_05384___    268 GTCAGAGAATTAGCGGTTGA---AGCTCAAAATGATACAAA-CGGCGAGG    313
                     ||..||||...||.|.||||   ||||   ||||.|||||| |.||.||.
BPUM_3189___f    268 GTTCGAGATAAAGTGCTTGATGCAGCT---AATGGTACAAAGCAGCCAGA    314

BSNT_05384___    314 CG---GAGCGGCAAGCGATTGGCGTAGAA----GTAAAGCAGTTAAAGGA    356
                     .|   .|||    |||.||.||.||.|||    ||    |||.|.|||.|
BPUM_3189___f    315 AGATTTAGC----AGCTATCGGAGTGGAAATTGGT----CAGATGAAGAA    356

BSNT_05384___    357 ACAGCTTTTAAAT-AT---TGCGAATACACAAGTGAAC-GGCAGATAT--    399
                     ||       |||| ||   |||||         ||||| ..|||||.|  
BPUM_3189___f    357 AC-------AAATCATTGATGCGA---------TGAACACTCAGATGTTA    390

BSNT_05384___    400 ---------ATCTTTAATGGCACAAATTCAGAT----AAGCCTCCGGTTA    436
                              .|.||||||||.||||||.||.||    ||    ||.|||.
BPUM_3189___f    391 GGTAAGTTCGTATTTAATGGAACAAATACAAATGTTAAA----CCAGTTG    436

BSNT_05384___    437 CAGATAACGGAGACGGAACTTATAC----AATTTCTG------ATACAGC    476
                     ..||.||||.|||.||.||.|.|||    ||.|| ||      ||||||.
BPUM_3189___f    437 TCGAAAACGCAGATGGTACGTTTACGTTTAACTT-TGAAAACTATACAGA    485

BSNT_05384___    477 TG---ATGTCGT--AGTC-AATATATCAAATAATATGTCATTGAAAGTGA    520
                     ||   ||..|||  |||| ||.||.|||.||..|||..|.||.||.||||
BPUM_3189___f    486 TGCAAATTCCGTTAAGTCGAACATTTCAGATGGTATCACTTTAAATGTGA    535

BSNT_05384___    521 ATTCAGATCCAAAGTCAGCTTTTGGAGGCAC-TTCTGAAAGCGGGCAAAA    569
                     |.|||.||||||..|||||.|||||.|| || .||||..|||||.|||||
BPUM_3189___f    536 ACTCAAATCCAATTTCAGCGTTTGGTGG-ACAGTCTGCCAGCGGCCAAAA    584

BSNT_05384___    570 TGTATTTGAAATGCT---TGATTCTTTTGAGAAAGCACT-------AAAT    609
                     |||..||||||||||   .||     ||.|||||  |||       ||| 
BPUM_3189___f    585 TGTCATTGAAATGCTGACGGA-----TTTAGAAA--ACTCATTGAAAAA-    626

BSNT_05384___    610 TCTG----GTTCGCTA-----GATGGCATGGACAATGTTTTAGATGA--T    648
                       ||    ||||||.|     ||||         |||..||||  ||  .
BPUM_3189___f    627 --TGGAACGTTCGCAAATTCTGATG---------ATGCGTTAG--GAAGC    663

BSNT_05384___    649 ATTGATCATTTTTCTGACGGCATGAGTGCTGAACGATCTGATCTT-GGAG    697
                     ||.|||||.|||...||.|..|||||||||||.||.||.|| ||| ||||
BPUM_3189___f    664 ATCGATCAGTTTAAAGAAGTGATGAGTGCTGAGCGCTCGGA-CTTAGGAG    712

BSNT_05384___    698 CGAGATATAATCGTCTTGAACTGGTTAATACG--------AGACTGTCAG    739
                     ||.|.|..||||||.||||    .|||.||.|        .|||| ||| 
BPUM_3189___f    713 CGCGTTCAAATCGTGTTGA----CTTAGTAGGCAGCCGTTTGACT-TCA-    756

BSNT_05384___    740 CGCAA---GAAGAAACAGCTACCAAAG-TGTTA--TCAGACAATGAAGAT    783
                       |||   .|||    .|||  ||||| ||.||  ||..|.|||||||||
BPUM_3189___f    757 --CAATTCCAAG----TGCT--CAAAGATGCTAAGTCTAATAATGAAGAT    798

BSNT_05384___    784 GTAGAACTGGAAGAGGTAATAACTGAATTTATTGCGCAGCAAAGTGTGCA    833
                     ||.|||...|||.|.|.|||...|||..||.||...||..|||.||||.|
BPUM_3189___f    799 GTTGAAAGTGAAAAAGCAATTCTTGATCTTCTTCAACAAGAAACTGTGAA    848

BSNT_05384___    834 CAGGGCTACTCTGGC--CGTTAATGCGCAAATTGTTCAGCC-TACATTGA    880
                     .||.||..||.|.||  ||  |..||..||.|..||||||| |.|.||| 
BPUM_3189___f    849 TAGAGCAGCTTTAGCAACG--ACGGCTAAAGTCATTCAGCCATCCCTTG-    895

BSNT_05384___    881 TTGACTTTTTAAAGTAA    897
                     |.||.||.||||..|||
BPUM_3189___f    896 TCGATTTCTTAAGATAA    912


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