Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04492 and BPUM_3207

See Amino acid alignment / Visit BSNT_04492 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:03
# Commandline: needle
#    -asequence dna-align/BSNT_04492___ytcB.1.24716.seq
#    -bsequence dna-align/BPUM_3207___galE2.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04492___ytcB-BPUM_3207___galE2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04492___ytcB-BPUM_3207___galE2.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04492___ytcB
# 2: BPUM_3207___galE2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1195
# Identity:     543/1195 (45.4%)
# Similarity:   543/1195 (45.4%)
# Gaps:         509/1195 (42.6%)
# Score: 997.0
# 
#
#=======================================

BSNT_04492___      1 ---ATGAAAATACTCGTCACAGGA-GCAGCGGGCTTTATCGGCTCCCACC     46
                        |.||||.||.|.||.||.||| |.|| .||.|||||.||.|  |||.
BPUM_3207___g      1 ATGAAGAAAGTATTGGTTACTGGAGGTAG-TGGATTTATAGGTT--CACA     47

BSNT_04492___     47 T-CTG-CGAAGAATTACTA---AAAG-ATAAGAA-ACATAACGTTATTGG     89
                     | ||| .|||||||||.||   |||| |||.||| .|||  |||..||  
BPUM_3207___g     48 TACTGTTGAAGAATTAATAAACAAAGAATATGAAGTCAT--CGTGCTT--     93

BSNT_04492___     90 AATCGATGACTTTATC----GGT---------CCTACTCCA--------T    118
                         |||.||||| ||    |||         ..||.|.||        |
BPUM_3207___g     94 ----GATAACTTT-TCAACAGGTAGGAAGGAAAATATTGCACATTTATCT    138

BSNT_04492___    119 TTTCCTTGAAATTAAAA------AACCTTAAAAACCTGCTGCAAGAAAAG    162
                     .||||.||.|.|.||.|      |||    ||||||         |.|||
BPUM_3207___g    139 GTTCCGTGTATTGAAGAGGATGTAAC----AAAACC---------AGAAG    175

BSNT_04492___    163 CGATTTACGTTCATAAAGGAAAATCTGCTGACAGCGGATCTTGCTCCCTT    212
                     .|.||.|..||..||||  ||||||                 ||.||   
BPUM_3207___g    176 TGGTTGAAATTATTAAA--AAAATC-----------------GCACC---    203

BSNT_04492___    213 ACTGGAAGGAGTGGACGTCATCTTTCATTTGGCGGCCATACCGG---GTG    259
                                 .|||...|||.|||||.|.||.||   ||..|   |||
BPUM_3207___g    204 ------------AGACTATATCATTCATCTTGCTGC---ACAAGTAAGTG    238

BSNT_04492___    260 TCCGCTCAAGC----TGGGGCAATCATTTTCACCCATATGCCGCACAT--    303
                     ||       ||    |.||.||||.|||   |...|||||      ||  
BPUM_3207___g    239 TC-------GCAGTATCGGTCAATGATT---ATATATATG------ATCA    272

BSNT_04492___    304 -------AATATCCAAGCGCTC------------CAAA--GGCTCCTC-G    331
                            |||||..||| |.||            ||||  ||||  || |
BPUM_3207___g    273 AGAAGTGAATATTAAAG-GATCTCTGCATGTGATCAAAGCGGCT--TCAG    319

BSNT_04492___    332 AGGC--GTGCCGGGAACATTCTATTCA--AACGTTCGTCTTTG---CATC    374
                     ||||  |||               |||  ||.| |.||.||||   ||||
BPUM_3207___g    320 AGGCTGGTG---------------TCAAGAAAG-TGGTATTTGCCTCATC    353

BSNT_04492___    375 CACCTCTTCCGTCTATGGCGAAAAACAAGGAAAAGT-------------C    411
                     ..||.||   ||||||||.||              |             |
BPUM_3207___g    354 AGCCGCT---GTCTATGGAGA--------------TCCTGTGTATCTGCC    386

BSNT_04492___    412 AGTGAAAACACGTCGCTTTCTCC--TTTA--------TCTCCGTACGGGG    451
                     |||  |.||||  |||  ||.||  ||.|        ||.|||||.||..
BPUM_3207___g    387 AGT--AGACAC--CGC--TCACCAGTTAAAGCCTGGTTCGCCGTATGGTT    430

BSNT_04492___    452 TAACAAAGCTTACGGGAGA-----------AAAGCTTTGC-----CATGT    485
                     ||.||||.||.||.|.|||           |||   |.||     ||| |
BPUM_3207___g    431 TATCAAAACTCACAGTAGAGCGGTACTTAGAAA---TGGCAAAAACAT-T    476

BSNT_04492___    486 GTATCAACAGAGTTTTGGCATTCCAATTGTGATTCTCCGTT-------TT    528
                     ||||       |.|.|||    .|.||||| |||||.||.|       |.
BPUM_3207___g    477 GTAT-------GATGTGG----ACTATTGT-ATTCTTCGGTATAGCAATG    514

BSNT_04492___    529 TTTACCGTATACGGGCCAAGACAGC----GGCCGGA-----------TAT    563
                     ||||..|  |.||.|.|||||| ||    |||  ||           |.|
BPUM_3207___g    515 TTTATGG--TCCGCGACAAGAC-GCACTTGGC--GAAGGGGGGGTTGTCT    559

BSNT_04492___    564 GGCTTTTCACCGGCTCATTAAGCAGCACCTTCAGCAA------AAGCCGC    607
                     .|.|||||.|.|     .||||        |..||||      |.|||.|
BPUM_3207___g    560 CGATTTTCTCTG-----ATAAG--------TTTGCAAAGGTTGAGGCCCC    596

BSNT_04492___    608 TTACCATCTTCGGTGATGGGCAGCAGTCAAGAGATTTCACTTATATCGGC    657
                     || .|||.||.||.||.|||.|.||..||||||||||||..|||.|.||.
BPUM_3207___g    597 TT-TCATTTTTGGGGACGGGGAACAAACAAGAGATTTCATCTATGTAGGT    645

BSNT_04492___    658 GACTGTGTCAAAGGCATCACCG-CTGTTCTTGGGAAACCCCGCCTTATTG    706
                     ||     ||.|  |||.||.|| .||||           .||.|||    
BPUM_3207___g    646 GA-----TCTA--GCAGCAGCGAATGTT-----------GCGGCTT----    673

BSNT_04492___    707 GTGAAACAGTAAATATCGGCGGCGCAGAGCGTGCCTCAGTCATAAAGGTT    756
                        .|||||                         ||||.||| ||.|.||
BPUM_3207___g    674 ---TAACAG-------------------------CTCAATCA-AACGTTT    694

BSNT_04492___    757 GTCTCCCTCATTGAGGATATTTC-----------CGGCAGAAAAGCAACA    795
                     ||        ||.|  |||||||           ||          |.||
BPUM_3207___g    695 GT--------TTAA--ATATTTCATGTGGGGATTCG----------ATCA    724

BSNT_04492___    796 CT--------GCACTTTTCGGACAAA--AT------AG---CAGGG----    822
                     ||        ||..|||     ||||  ||      ||   |.|||    
BPUM_3207___g    725 CTGTGAATGAGCTGTTT-----CAAACGATGAAGCGAGTGACGGGGTCGC    769

BSNT_04492___    823 -----GAACC----------GCGCAACACGTG--GGCGGATATT------    849
                          |||||          |||||  .||||  || |||||||      
BPUM_3207___g    770 ATCTTGAACCAATTTACAAGGCGCA--GCGTGCAGG-GGATATTGTGCAT    816

BSNT_04492___    850 ---------TCAA------AAGCAAAACAGCTCTTGCATTATAATCCCGC    884
                              ||||      ||.|.|||||..||||        ||     
BPUM_3207___g    817 AGTACATTGTCAAATGAGGAAACGAAACAAGTCTT--------AT-----    853

BSNT_04492___    885 CACAT-----CC----------TTAAAGGATGGCTTG------ACCAACG    913
                       |||     ||          |||.||||.||.|||      |||    
BPUM_3207___g    854 --CATGGGAGCCTGTTGTGAGTTTACAGGAAGGTTTGGCTCGTACC----    897

BSNT_04492___    914 AAATCACCTATTTATCGTCGCTGT-ATCAGG------GGGAATAA    951
                       ||..||||          ||.| |.||||      .||..|||
BPUM_3207___g    898 --ATTTCCTA----------CTATGAACAGGAAGTCAAGGCTTAA    930


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