Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05418 and BPUM_3208

See Amino acid alignment / Visit BSNT_05418 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:02
# Commandline: needle
#    -asequence dna-align/BSNT_05418___tuaD.1.24716.seq
#    -bsequence dna-align/BPUM_3208___tuaD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05418___tuaD-BPUM_3208___tuaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05418___tuaD-BPUM_3208___tuaD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05418___tuaD
# 2: BPUM_3208___tuaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1412
# Identity:     924/1412 (65.4%)
# Similarity:   924/1412 (65.4%)
# Gaps:         154/1412 (10.9%)
# Score: 2817.0
# 
#
#=======================================

BSNT_05418___      1 ATGTTGAAAAGAATTGCTGTCATTGGGACGGGATATGTCGGGCTGGTGTC     50
                     ||||||||.|.|||||||||.|||||.||.||.|||||||||.|.||.||
BPUM_3208___t      1 ATGTTGAAGAAAATTGCTGTGATTGGAACAGGGTATGTCGGGTTAGTATC     50

BSNT_05418___     51 TGGAACTTGTTTTGCTGAAGTGGGAAACTC-AGTTGTCTGCTGTGATATC     99
                     .||.||||||||||||||..|.||||| || .||..||||||||||.||.
BPUM_3208___t     51 GGGTACTTGTTTTGCTGATATCGGAAA-TCGTGTCATCTGCTGTGACATT     99

BSNT_05418___    100 GACGCTGA---AAAAAT-AAGAGGACTCTT----AGCCGGAGTAATGCCG    141
                     ||   |||   |||||| ||.||    |||    || .||.||..|.||.
BPUM_3208___t    100 GA---TGAATCAAAAATCAACAG----CTTAAAAAG-TGGTGTCGTTCCC    141

BSNT_05418___    142 ATTTATGAGAACGGCCTAAAAGAGCTTG-TGGATAAAAA---CGTA-AAC    186
                     |||||||| |.|||..|.||||...||| |.||.||.||   ||.| ||.
BPUM_3208___t    142 ATTTATGA-ACCGGGTTTAAAGGAATTGATTGAAAAGAATACCGAAGAAG    190

BSNT_05418___    187 GAAAATCGCTTATTTTTCTCTACTGATATTCCAAAAGCGATTGAAGAAGC    236
                     |||    |..|.|||||..|.||..|||||||....||.||....|||.|
BPUM_3208___t    191 GAA----GACTGTTTTTTACAACCAATATTCCTGCTGCTATCAGGGAATC    236

BSNT_05418___    237 TGAGATTATTTATATTGCAGTCGGAACACCGATGTCGGAAACAGGG-GAA    285
                     .||.|||||.||||||||.||.||.||.||||||.|.| .|||||| |||
BPUM_3208___t    237 AGACATTATCTATATTGCTGTAGGGACTCCGATGACAG-CACAGGGAGAA    285

BSNT_05418___    286 GCAGATCTGACATTTGTTAAATCTGTTGCCGAAATGATCGGAAAGCATCT    335
                     ||||||.|.||.|..||.|||.||||.||..|||..||.||..|.|||.|
BPUM_3208___t    286 GCAGATTTAACGTACGTGAAAGCTGTCGCTCAAACAATTGGTGAACATTT    335

BSNT_05418___    336 GAACGGCTATAAAGTCATCGTCAACAAAAGCACTGTCCCTGTTGGCACTG    385
                     .||.|||||.|||.||||||||||.||||||||.||.||.|||||.||.|
BPUM_3208___t    336 AAATGGCTACAAAATCATCGTCAATAAAAGCACAGTGCCCGTTGGAACAG    385

BSNT_05418___    386 GAAAGCTCATACAAGGTATCATACAACGTATTTC--AAAAGGA-------    426
                     |...||||.|.||||..||           |.||  |||||.|       
BPUM_3208___t    386 GCCGGCTCGTTCAAGCCAT-----------TGTCGAAAAAGCATCGCGCA    424

BSNT_05418___    427 -GAAGT-TCCTTTCGACGTCGTTTCGAATCCCGAATTCCTTCGTGAAGGA    474
                      .|||| ||||||.||.|||||.||.|||||.|||||.||..|.|||||.
BPUM_3208___t    425 GTAAGTATCCTTTTGATGTCGTATCCAATCCAGAATTTCTCAGAGAAGGC    474

BSNT_05418___    475 ACAGCTATTTACGATACGATGAATATGGAAAGAGCCGTCATCGGCGCGAC    524
                     .|.||.||..|.|||||||||||||||||..|.|..||.||.||..|.||
BPUM_3208___t    475 TCTGCCATCAAAGATACGATGAATATGGAGCGGGTGGTTATAGGGTCTAC    524

BSNT_05418___    525 AAG-----------CGAAAGGGCTGCTGCGATAATTGAAGAACTT-CATA    562
                     |||           ||.||           ||.||| ||||..|| |||.
BPUM_3208___t    525 AAGTTCTCATGCATCGGAA-----------ATCATT-AAGACGTTACATG    562

BSNT_05418___    563 AGCCTTTTCAAAC----------GAAAATTGTCAAGTCTAACCTTGAAAG    602
                     |.||.||||||||          ||||          |.|||||.|||||
BPUM_3208___t    563 AACCGTTTCAAACAGTAGTGGTTGAAA----------CCAACCTAGAAAG    602

BSNT_05418___    603 TGCAGAAATGATTAAATATGCTGCAAATGC-ATTTTTGGCTACAAAGATC    651
                     ||||||||||||||||||.||.|||||||| ||..|| ||.||.||.||.
BPUM_3208___t    603 TGCAGAAATGATTAAATACGCAGCAAATGCGATGCTT-GCAACCAAAATT    651

BSNT_05418___    652 TCGTTCATTAATGATATCGCGAATATTTGCGAAAGAGTCGGAGCTGACGT    701
                     ||.||.||.||||||||.||.|||||||||||..||||.||.||.||.||
BPUM_3208___t    652 TCTTTTATCAATGATATTGCCAATATTTGCGATCGAGTGGGTGCAGATGT    701

BSNT_05418___    702 ATCA-AAGGTGTCTGAAGGTGTCGGACTCGACAGCAGAATCGGCAATAAA    750
                      |.| ||.||.||.|||||.||.||.||.||.|||.||||.||..|.||.
BPUM_3208___t    702 -TGAGAAAGTATCAGAAGGCGTTGGTCTAGATAGCCGAATTGGACAGAAG    750

BSNT_05418___    751 TTTTTAAAAGCCGGAATCGGCTTTGGTGGCTCCTGCTTCCCTAAAGATAC    800
                     |||||||||||||||.|.||.|||||.||.|||||||||||.||.|||||
BPUM_3208___t    751 TTTTTAAAAGCCGGAGTTGGTTTTGGAGGTTCCTGCTTCCCGAAGGATAC    800

BSNT_05418___    801 AATGGCTTTATTGCATATCGC-GAAGTCAGCCGGCTACCCTTTTAAAATG    849
                     .|.|||..||||..|.||.|| ||| .|||..||.||.|.||||||..|.
BPUM_3208___t    801 CAAGGCACTATTAAAAATAGCTGAA-ACAGTAGGTTATCGTTTTAAGTTA    849

BSNT_05418___    850 ATTGAAGCCGTCATCGAGACGAACCAAAAGCAGCGTGCCCACATTGTGCA    899
                     ||||||.|.||..||||.||.||...|.|.||.||.||..|..|.|||.|
BPUM_3208___t    850 ATTGAATCTGTTGTCGAAACAAATACACATCAACGAGCGTATCTCGTGAA    899

BSNT_05418___    900 GAAGCTCCTTGATGTGTTCGGCGATTTAAACGGCAAGACCATTTCAATTC    949
                     |||..|..|.|||||.|..||.||..|.||.||.||.||.||.||..|..
BPUM_3208___t    900 GAAATTGATGGATGTCTATGGTGACATCAAGGGAAAAACGATCTCTGTAT    949

BSNT_05418___    950 TTGGTTTGGCATTCAAGCCTAATACAAACGATATGCGCTCAGCTCCATCT    999
                     |.||.||||||||.||.|||||||||||.|||.|..|.||..||||..||
BPUM_3208___t    950 TAGGATTGGCATTTAAACCTAATACAAATGATTTAAGATCCTCTCCTGCT    999

BSNT_05418___   1000 CTGGATGTCATTCCGACGCTG--AGAAGTCTTGGTGCTAAAGTCAAAGCG   1047
                     ||.|||.|.|||||.|.|.||  |||  |||.||.|||.|.||.||||||
BPUM_3208___t   1000 CTTGATATTATTCCAATGTTGCAAGA--TCTAGGAGCTTATGTAAAAGCG   1047

BSNT_05418___   1048 TTTGATCCGATTGCGGTTC-CT--GAAGCAGAA-AAGATTCTGGGCGATC   1093
                     |.|||.||.|||||   || ||  ||||| ||| |||||.||.||..|.|
BPUM_3208___t   1048 TATGACCCAATTGC---TCACTTAGAAGC-GAAGAAGATCCTTGGAAACC   1093

BSNT_05418___   1094 AAGCTGTTTACAGCGAAGATCTGTATGAGACGATTCAAGATACGGATGCC   1143
                     ||.|..|.|.|||.||..|.||.|||.|.||.||..|..||.|.|||||.
BPUM_3208___t   1094 AAACGATATTCAGTGACAACCTATATCAAACTATAGAGCATTCAGATGCA   1143

BSNT_05418___   1144 TGCGTCATATTGACAGAGTGGCATGAGATACAGAACATGGATATTACCAA   1193
                     ||..||||.|||||.||.|||.|.||..||...||.||||||||....||
BPUM_3208___t   1144 TGTTTCATCTTGACTGAATGGGAAGAAGTATTAAAAATGGATATGGAGAA   1193

BSNT_05418___   1194 ACTC--AAGGCCGCTTTGAAAAATCCCGTCTTAATCGATGGACGTAATAT   1241
                     |.||  |||.|..|||  .||..|||.||..|.||.||||||||||||||
BPUM_3208___t   1194 AGTCAGAAGACTACTT--CAACGTCCAGTGATCATTGATGGACGTAATAT   1241

BSNT_05418___   1242 ATTTGAAGTTGAAAAAATGAGAAACGAAGGTATGATCTATCATTCAATCG   1291
                     |||||||...|||.||||||||||..|.||..|.||.||||||||.||||
BPUM_3208___t   1242 ATTTGAACCAGAACAAATGAGAAAAAACGGCTTTATTTATCATTCGATCG   1291

BSNT_05418___   1292 GACGGCCGGAAGTACAGG---------------TAGAAG---GAATTCTG   1323
                     |.||.||..|.|||||||               ||||||   ||      
BPUM_3208___t   1292 GTCGTCCTCATGTACAGGATGTTAAGATGTTATTAGAAGCTTGA------   1335

BSNT_05418___   1324 ACCAACGTATAA   1335
                                 
BPUM_3208___t   1335 ------------   1335


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