Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05428 and BPUM_3215

See Amino acid alignment / Visit BSNT_05428 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:03
# Commandline: needle
#    -asequence dna-align/BSNT_05428___lytB.1.24716.seq
#    -bsequence dna-align/BPUM_3215___lytB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05428___lytB-BPUM_3215___lytB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05428___lytB-BPUM_3215___lytB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05428___lytB
# 2: BPUM_3215___lytB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2375
# Identity:    1397/2375 (58.8%)
# Similarity:  1397/2375 (58.8%)
# Gaps:         496/2375 (20.9%)
# Score: 3469.5
# 
#
#=======================================

BSNT_05428___      1 TTGAAAAAGATGAAGCTTCT-----------GGTTCTGTCGTCAGTAACT     39
                     |||||||| ||.|||  |||           .||    ||.||  |.|||
BPUM_3215___l      1 TTGAAAAA-ATTAAG--TCTAACATTTACAACGT----TCATC--TTACT     41

BSNT_05428___     40 GCTGCAGCTCTGATGTTTACGCAATCTGCCCAGGCTGC--CGACAA-AAC     86
                     ..||     ||..|.||||.||.|..||   |.|||||  ||.||| ..|
BPUM_3215___l     42 TTTG-----CTTGTATTTATGCCAAATG---ATGCTGCAGCGGCAAGCTC     83

BSNT_05428___     87 AATTTCGGTAAAGTTAAGTAATTAT-TTGGGCAAT-AAATCAAGTGTT--    132
                     ||||||.||.||.|||...||.||| ||||| ||| |||.|||.| ||  
BPUM_3215___l     84 AATTTCTGTTAAATTATCAAACTATGTTGGG-AATAAAAACAACT-TTAA    131

BSNT_05428___    133 GATATCGACATTACCGGCTTATACGAAATTCCGGG--CTCAGGAATC-TC    179
                     .|||||..|||  |||||||||||.||.|..|.||  |..|.|.||| ||
BPUM_3215___l    132 CATATCATCAT--CCGGCTTATACAAAGTAACTGGTACAAATGTATCTTC    179

BSNT_05428___    180 CG-----CGACA-GAGCGGTACGGCGGGGCGACCCGCTTTGATGTGGCAA    223
                     ||     |||.| || .||||        .||.|||.|.|||.||.||.|
BPUM_3215___l    180 CGTCGCTCGATATGA-TGGTA--------AGAACCGTTATGAGGTAGCCA    220

BSNT_05428___    224 ACAATGTCGCATCTGCCGGATGGACGAACCCGAGC-ACAGTCGTGATTGT    272
                     |.|.|.||||.||.||.||.||||..||.|| |.| ||..|.||.|||||
BPUM_3215___l    221 ATAGTATCGCTTCAGCAGGTTGGAAAAATCC-ATCTACCATTGTCATTGT    269

BSNT_05428___    273 CAACCGAGACGCTTTTGCGGACGCGCTCTCTGCAACTCC----GCTTGCA    318
                     .||.||.|||||.|||||.||.||..|.||.||.||.||    ||||..|
BPUM_3215___l    270 AAATCGTGACGCATTTGCAGATGCTATTTCCGCTACACCATTAGCTTATA    319

BSNT_05428___    319 AA--GAAGTACGATGCGCCGATTCTTTTA-ACAGATGCGGGAACGCTGAC    365
                     ||  ||      ||||.||.||| ||.|| ||..||||.|.||...|.||
BPUM_3215___l    320 AACTGA------ATGCACCTATT-TTATATACGAATGCTGAAAAATTAAC    362

BSNT_05428___    366 GGCGAAA----ACCGAAACTCAAATTGCCAAGATGAAGCCAGATAACATC    411
                         |||    ||.||||..||||||...||.|||||.||.|||||.||.
BPUM_3215___l    363 ----AAAGACCACTGAAAAGCAAATTAAAAAAATGAATCCTGATAATATT    408

BSNT_05428___    412 TTAATTATCGGTGGAACAACGAGCGTTTC-----CAA-----AAATG--T    449
                     .|.|||||||||||||||||.||.|||||     |||     ||| |  |
BPUM_3215___l    409 CTCATTATCGGTGGAACAACAAGTGTTTCTTCAGCAACTGAGAAA-GCAT    457

BSNT_05428___    450 TGA--AAACACGCTGA------AAAAGTAT--GGGGCAATTGTCCGTATC    489
                     |.|  |||.|||  ||      |||||.||  |.||.||        |||
BPUM_3215___l    458 TAAAGAAATACG--GAAAGATCAAAAGAATCAGTGGTAA--------ATC    497

BSNT_05428___    490 GGCGGCGCCAATCGATATGATGTGTCTAAAAATATTGC----GAGCCGGA    535
                                .||.||||.|||.||..||||.|||||    ||    ||
BPUM_3215___l    498 -----------ACGTTATGCTGTTTCACAAAACATTGCAAAAGA----GA    532

BSNT_05428___    536 TGGGGTCCTACAGCCAGGCGATTGTTGCCACCGG------TTTGGTCTTC    579
                     |||||..|||.||..|.||.||.||.||.||.||      |||    |.|
BPUM_3215___l    533 TGGGGAACTATAGTGAAGCTATAGTGGCAACAGGAAGCATTTT----TAC    578

BSNT_05428___    580 TCCGAC---GCTCTGTCGATCGCGCCTTATGCGGCAATGAACGGTTATCC    626
                     |  |||   |||   ||..|..|.||.|||||.||||..|||||.||.||
BPUM_3215___l    579 T--GACAGTGCT---TCAGTAACTCCATATGCTGCAAGAAACGGCTACCC    623

BSNT_05428___    627 GATACTGCTCTCAGGGAATAA--------TACGATCCGAAGCGA-TTACA    667
                     .||.|||   |.|..|||.||        |||         |.| |||||
BPUM_3215___l    624 TATTCTG---TTAACGAAGAAAGACAGTTTAC---------CCACTTACA    661

BSNT_05428___    668 ATATTCCGAGCAAAGTTACAATCGTCGGCGGTCCGTTGAGTGTCAGCACA    717
                     |..|.||||..||||||...||..|.||.||......||||||.||||.|
BPUM_3215___l    662 AACTCCCGAAAAAAGTTGTGATTATTGGTGGAGAAAAGAGTGTTAGCAAA    711

BSNT_05428___    718 AGTGTTGAA-AACACATTAAAGAAAAAAG-CGGCTGTTACCCGCATCGGC    765
                     |..|||||| ..||.|||||  |||||.| |..||||.|...|.||.||.
BPUM_3215___l    712 AAAGTTGAATCTCAAATTAA--AAAAACGTCCACTGTGAAAAGAATAGGT    759

BSNT_05428___    766 GGTGCGAACAGATATGAAGTGTCTGCGAATATTGTTAAC-GCGCTTAACA    814
                     ||.||.||.||||||||.||.|||||.||||||| |||| |.|.|.||||
BPUM_3215___l    760 GGAGCTAATAGATATGAGGTCTCTGCAAATATTG-TAACTGGGTTAAACA    808

BSNT_05428___    815 TGAACGC--ATCAAAGGTTTTCATGT--CTAACGGAATGACTTTTGCAGA    860
                     ||||.||  ||  |||.|.|  ||.|  |.|||||....|.|||..||||
BPUM_3215___l    809 TGAATGCTAAT--AAGCTAT--ATTTAGCAAACGGTTCTATTTTCACAGA    854

BSNT_05428___    861 TGCACTGGCCGGTTCCGTCCTTGCAGCCA--AACAAAAGCATCCTTTGCT    908
                     ||||.|..|...|||..|..|.|||||||  ||.||.|||  |||.||.|
BPUM_3215___l    855 TGCAATTACATTTTCACTTTTAGCAGCCAAGAATAACAGC--CCTATGGT    902

BSNT_05428___    909 ACTTGT-----CCAATCGGGCAGTTTGCCGCCTCCTGTCGCAGATGT-AG    952
                     ||||||     ..|||     |||.|..|..|.|||||    ||..| |.
BPUM_3215___l    903 ACTTGTGAAAGAAAAT-----AGTCTAACATCACCTGT----GACATCAA    943

BSNT_05428___    953 TCGCCAAAAAA---GGAACACAGTCTTTTGCTTTG-CT--TGGAGGGA--    994
                     |.|.|||||||   ||.||..|.|||||....||| ||  |||||..|  
BPUM_3215___l    944 TTGTCAAAAAACAGGGGACGTACTCTTTCCAATTGTCTGGTGGAGTAAAA    993

BSNT_05428___    995 -CC----------GCCT-CGATC-----------ACGGA--TTCGTTGAA   1019
                      ||          |.|| |.|||           |.|.|  ||..|||||
BPUM_3215___l    994 TCCATTTCAGCAAGTCTACAATCTAAATTATCAAAAGAATTTTATTTGAA   1043

BSNT_05428___   1020 AAACAGCCTGGCAGAT-ATGATTACCGGGAACGGATACTCTGTTAATCTA   1068
                     .||.|         || |.|||||.|   ||..||    .||||  ||||
BPUM_3215___l   1044 GAATA---------ATAAGGATTATC---AATTGA----ATGTT--TCTA   1075

BSNT_05428___   1069 TCGGGCGGAAAGCTTGTGCTCAACAAAAAT---AAT-AAAGCTGTCAAAA   1114
                     .|||                    ||||||   ||| ||||...|.||.|
BPUM_3215___l   1076 ACGG--------------------AAAAATTTCAATCAAAGGCATTAAGA   1105

BSNT_05428___   1115 CGTTTGAAACTTCA----------TTTACGGCATCACCTAAAAAATATTC   1154
                     |.||||.|.|||||          ||          ||..|.||||||||
BPUM_3215___l   1106 CATTTGGATCTTCAGTAAGAGTTGTT----------CCAGAGAAATATTC   1145

BSNT_05428___   1155 GACTTCAAATTCCATCAGCATCAA------CGGAAGGCCTTATTTAGGCA   1198
                     .|||.|||||..|||     ||.|      .||||.| |.||.||.||.|
BPUM_3215___l   1146 AACTACAAATGTCAT-----TCGAGTTGCTGGGAAAG-CATACTTGGGGA   1189

BSNT_05428___   1199 ATATGAAGTTTACGATTGAATCAAGCAAATATATTCGACCGATAAACGAA   1248
                     |.|||||.|||.|..|.||||||.||   |||||||||||.|.|||.|||
BPUM_3215___l   1190 ACATGAATTTTGCTGTAGAATCAGGC---TATATTCGACCAACAAATGAA   1236

BSNT_05428___   1249 AACATTCCGTTTGAAGATTATCTAAAAGGTGTTGTGCCGCACGAAATGCC   1298
                     |||||.||.||||||||||||||.|||||.|||||||||.|.||||||||
BPUM_3215___l   1237 AACATCCCTTTTGAAGATTATCTTAAAGGGGTTGTGCCGAATGAAATGCC   1286

BSNT_05428___   1299 GGCAAGTTGGCAGACTGAAGCTTTAAAAGCCCAAGCGGTGGCAGCGAGAA   1348
                     .|||||.|||||...|||.||.||.|||||.||.||.||.|||||..|.|
BPUM_3215___l   1287 AGCAAGCTGGCATGTTGAGGCATTGAAAGCACAGGCTGTTGCAGCACGTA   1336

BSNT_05428___   1349 CATATTCGGT---CGGT-TCCGCAGGAAAAGTAGTGGCTGATACGCAATC   1394
                     |||||||.||   |.|| |    |||.|||||.|||.|.|||||...|.|
BPUM_3215___l   1337 CATATTCTGTAAGCAGTAT----AGGGAAAGTTGTGCCAGATACAACAGC   1382

BSNT_05428___   1395 GTTTCAGGTTTACGGCGGATATGACTGG------AATTCGA-AGACATCC   1437
                     |||.||.||.||.|||||.|||.|||||      ||.||.| |.|     
BPUM_3215___l   1383 GTTCCAAGTATATGGCGGTTATAACTGGTCTACAAACTCTACAAA-----   1427

BSNT_05428___   1438 AGCGTTGTAAATTCCACAAAAGGACAA-GTTTTAAAATATAACGGCAATT   1486
                     |||  ||||.||.|.|||||||| ||| ||.|||||||||||....|.|.
BPUM_3215___l   1428 AGC--TGTAGATGCTACAAAAGG-CAAGGTATTAAAATATAATAATAGTC   1474

BSNT_05428___   1487 TGATTTCGGCCGTTTACTCATCAAGCAACGGGGGATATACGGAAGCAAGC   1536
                     |||||||.||....||.|..||.||.||.||.||.||.||.||.||.||.
BPUM_3215___l   1475 TGATTTCTGCAACCTATTATTCTAGTAATGGAGGCTACACCGAGGCTAGT   1524

BSNT_05428___   1537 GCAGAGGTATGGGGCGGCAA-TG---TTCCATATTTAATCGCCAAAGCGG   1582
                     |.|||.||.||    |.||| ||   ||||.||..||.||||.|||||.|
BPUM_3215___l   1525 GAAGAAGTGTG----GTCAAGTGCATTTCCTTACCTAGTCGCAAAAGCAG   1570

BSNT_05428___   1583 ATACATATGACCCGAAAACCA-GCTGGTCGATATCTTTGAAT----AAAA   1627
                     |||||.|.||.||.||||  | |||  |.||.| |||..|.|    ||||
BPUM_3215___l   1571 ATACAAAAGATCCAAAAA--ATGCT--TGGACA-CTTAAACTATCAAAAA   1615

BSNT_05428___   1628 CGCAGATCA--ACACCAGCGGCTTAAATCTGAG-CAGCCCTAGCA-CTTG   1673
                     |.||..|.|  |||.||    ||||   .||.| ||.|.|.|||| ||||
BPUM_3215___l   1616 CTCAATTGAGTACATCA----CTTA---GTGCGTCATCTCCAGCATCTTG   1658

BSNT_05428___   1674 GTGGAATTCGACTAATGAAACGAACTCC--GCCTATTTATCGGGACTGAA   1721
                     |||||.|..|||....||||| ||.|.|  |.|..||.|..||| .||||
BPUM_3215___l   1659 GTGGAGTAAGACAGCAGAAAC-AAATGCAAGTCAGTTGAATGGG-TTGAA   1706

BSNT_05428___   1722 AAGCTGGTTTATGACCAAT----AAATATCCTAG-TGCGGAATCTATTAA   1766
                     .|.||||.||.|.|..|||    |||.|||  || |.|.||   .|||||
BPUM_3215___l   1707 GAACTGGATTCTAAAAAATAAAGAAACATC--AGCTTCAGA---GATTAA   1751

BSNT_05428___   1767 GATCACGAAAATCTCAAGCCTGAGC----CTGAGCAGTGCAAAAACTGCC   1812
                     |||..|.||.||.||.||..|.|.|    |||.|       |||||....
BPUM_3215___l   1752 GATTGCTAATATTTCTAGTGTCACCTTTTCTGGG-------AAAACAAAA   1794

BSNT_05428___   1813 GGTCAGCGGCCGAAAACAGCAGAGGTGAAGTTTTCTTACTTTGTCAAAG-   1861
                     ||.|||.|..|.||||||||              ||  |||||  |||| 
BPUM_3215___l   1795 GGGCAGAGAGCAAAAACAGC--------------CT--CTTTG--AAAGT   1826

BSNT_05428___   1862 -------------AAAAATCAAATGGCTATGTTCTGTCAAACGGAAAACT   1898
                                  ||||||.|||    .|.|||               |.
BPUM_3215___l   1827 TAGCTATCACTTAAAAAATAAAA----CAGGTT---------------CC   1857

BSNT_05428___   1899 TTCAG-----AAAAAACAGCGAC-----GATTTCCGTGACGACGACTCAA   1938
                     |.|||     |.|||.||||.||     |.|||     |..|.||||.||
BPUM_3215___l   1858 TACAGTATGAATAAATCAGCAACACTTAGTTTT-----AAAATGACTGAA   1902

BSNT_05428___   1939 TTAAGATCGATGTTGGGCGGCATGAATATGAAGAGCACGTATGCTTCTTT   1988
                     ||.|||||.||..||||.|.||..|||.|.||.|||||.||.|||||   
BPUM_3215___l   1903 TTTAGATCAATACTGGGTGCCACTAATTTAAAAAGCACATACGCTTC---   1949

BSNT_05428___   1989 A-TCA--AACAATACGAACGCTTTTATTCTCAGCGGTAAAGGATTCGGCC   2035
                     | |||  |||||.||.||.|.|||.|.|.|||..||.|||||||..||.|
BPUM_3215___l   1950 AGTCAAGAACAACACCAATGATTTCACTATCACAGGAAAAGGATATGGAC   1999

BSNT_05428___   2036 ACGGAATCGGCATGAGTCAGTATGGAGC--AAATGCCAGAGCTGCTGCCG   2083
                     |.|||.|.||.||||||||.||||||||  |||||  |||||||...|.|
BPUM_3215___l   2000 ATGGAGTTGGAATGAGTCAATATGGAGCGAAAATG--AGAGCTGAATCAG   2047

BSNT_05428___   2084 G--GCACGATTA--CAAGAAGATTTTAAGT--TTCTATTATCC-------   2120
                     |  ||||  .||  ||||  .|||||  ||  |||||||||||       
BPUM_3215___l   2048 GAAGCAC--ATACTCAAG--CATTTT--GTCATTCTATTATCCAGGCGCA   2091

BSNT_05428___   2121 AAATACGACTCTATCAAGCTATTAA   2145
                     ||||       ||.|||...|||||
BPUM_3215___l   2092 AAAT-------TAACAACAAATTAA   2109


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