Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05440 and BPUM_3219

See Amino acid alignment / Visit BSNT_05440 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:03
# Commandline: needle
#    -asequence dna-align/BSNT_05440___gtaB.1.24716.seq
#    -bsequence dna-align/BPUM_3219___gtaB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05440___gtaB-BPUM_3219___gtaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05440___gtaB-BPUM_3219___gtaB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05440___gtaB
# 2: BPUM_3219___gtaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 889
# Identity:     690/889 (77.6%)
# Similarity:   690/889 (77.6%)
# Gaps:          17/889 ( 1.9%)
# Score: 2647.0
# 
#
#=======================================

BSNT_05440___      1 TTGAAGAAAGTTCGTAAAGCGATAATTCCCGCAGCGGGCCTTGGGACACG     50
                     |||||.|||||.||.|||||.||.||.||.||.||.||.||.||||||||
BPUM_3219___g      1 TTGAAAAAAGTACGGAAAGCCATTATACCAGCTGCAGGTCTCGGGACACG     50

BSNT_05440___     51 TTTCCTCCCTGCAACGAAAGCGATGCCTAAAGAAATGCTTCCAATCGTAG    100
                     |||||||||||||||.|||||.|||||||||||.|||||.||||||||.|
BPUM_3219___g     51 TTTCCTCCCTGCAACAAAAGCCATGCCTAAAGAGATGCTCCCAATCGTTG    100

BSNT_05440___    101 ATAAGCCAACTATTCAATATATTATTGAAGAAGCCGTTGAAGCCGGCATT    150
                     ||||.|||||.|||||||||||||||||||||||.||||||.|.||.||.
BPUM_3219___g    101 ATAAACCAACCATTCAATATATTATTGAAGAAGCTGTTGAATCAGGAATC    150

BSNT_05440___    151 GAAGATATTATCATCGTAACAGGTAAAAGCAAACGAGCGATTGAAGACCA    200
                     |||||.|||||.|||||.||.||.|||.|.|||.||||.||||||||.||
BPUM_3219___g    151 GAAGACATTATTATCGTCACTGGAAAAGGAAAAAGAGCAATTGAAGATCA    200

BSNT_05440___    201 TTTCGATTTCTCGCCGGAACTCGAAAGAAACCTTGAGGAAAAGGGTAAAA    250
                     |||.|||||..|.||.|||||.||..|.|||||.||||||||.||.||||
BPUM_3219___g    201 TTTTGATTTTGCTCCAGAACTTGAGCGTAACCTAGAGGAAAAAGGGAAAA    250

BSNT_05440___    251 CCGAACTGCTTGAAAAAGTAAAAAAAGCGTCAAACCTCGCTGATATTCAC    300
                     ..||.|||.|.||||||||||..|||.|.||.|||.|.||||||||.|||
BPUM_3219___g    251 AGGAGCTGTTAGAAAAAGTAAGGAAATCTTCTAACATTGCTGATATCCAC    300

BSNT_05440___    301 TATATTCGCCAAAAAGAACCAAAAGGACTTGGGCATGCCGTTTGGTGCGC    350
                     ||.|||||.|||||||||||||||||.|||||.|||||.||||||||.||
BPUM_3219___g    301 TACATTCGTCAAAAAGAACCAAAAGGTCTTGGTCATGCTGTTTGGTGTGC    350

BSNT_05440___    351 ACGCAACTTTATTGGAGACGAGCCATTCGCAGTTCTCCTTGGAGACGACA    400
                     |.|.||||||||.||.||.|||||.||.||.|||.|..|.||.||.||||
BPUM_3219___g    351 AAGAAACTTTATCGGTGATGAGCCTTTTGCTGTTTTATTAGGTGATGACA    400

BSNT_05440___    401 TTGTCCAAGGAGAAAAACCTGGTCTTCGCCAGCTGATGGACGAGTACGAA    450
                     ||||.||||..||||.||||||.||.||||||||||||||.||.||||||
BPUM_3219___g    401 TTGTTCAAGCCGAAACACCTGGGCTCCGCCAGCTGATGGATGAATACGAA    450

BSNT_05440___    451 AAGACTCTCTCTTCCGTTATTGGCGTTCAGCAAGTACCTGAAGACCAAAC    500
                     ||.|||||.||.||.||.|||||.||||||||||||.|.||..||.|.||
BPUM_3219___g    451 AAAACTCTATCATCTGTCATTGGTGTTCAGCAAGTAGCAGATCACGATAC    500

BSNT_05440___    501 GCATCGCTACGGAATCATTGATCCTCTGACAAACGAAGGGCGCCTATATC    550
                     ||||||||||||.||.||.||||||||.|||.|.|||||.||||..||.|
BPUM_3219___g    501 GCATCGCTACGGGATTATCGATCCTCTTACACAAGAAGGACGCCGTTACC    550

BSNT_05440___    551 AGGTCAAAAACTTTGTAGAAAAACCAAAACCG---GGCACGGCACCGTCT    597
                     |.||.|||||||||||.|||||.||   .|||   ||.||.|||||.||.
BPUM_3219___g    551 AAGTGAAAAACTTTGTTGAAAAGCC---GCCGCAAGGAACAGCACCATCG    597

BSNT_05440___    598 AACCTTGCGATTTTGGGACGGTATGTCTTTACTCCTGAAATTTTCATGTA    647
                     ||.||.||.|||||.|||||.||..|.||.||.||.||.||.||||||||
BPUM_3219___g    598 AATCTAGCCATTTTAGGACGCTACATTTTCACGCCAGAGATCTTCATGTA    647

BSNT_05440___    648 CTTAGATAAACAGCAA---ATCGGTGCAGGGGGAGAGATCCAGCTGACCG    694
                     |.|.|   ||||||||   ||.||||||||.||.||.||.||||||||.|
BPUM_3219___g    648 CCTCG---AACAGCAAGAGATTGGTGCAGGTGGGGAAATTCAGCTGACAG    694

BSNT_05440___    695 ATGCTATTCAGCAGTTAAACGAAATCCAGCGCGTATTTGCTTATGACTTT    744
                     ||||.||.|||.||.|.||.||.||||||||.|||||.||.|||||.|||
BPUM_3219___g    695 ATGCCATCCAGAAGCTGAATGACATCCAGCGAGTATTCGCCTATGATTTT    744

BSNT_05440___    745 GAAGGCAAACGCTATGATGTTGGAGAAAAACTCGGTTTTATCCAGACAAC    794
                     |||||.|||||.||.|||||.||.||.||.|..||.||.|||.|||||||
BPUM_3219___g    745 GAAGGAAAACGATACGATGTCGGTGAGAAGCAAGGCTTCATCGAGACAAC    794

BSNT_05440___    795 TCTCGAATTTGCCATGCAGGA-CAGCGAACTGAAGGATTCACTGATTCCA    843
                     .||.|||||||||.|.||.|| .|| ||.|||||..|...|||.||||||
BPUM_3219___g    795 GCTTGAATTTGCCCTTCAAGATGAG-GATCTGAAAAAGAAACTCATTCCA    843

BSNT_05440___    844 TTTATGCAGGACCTTCTGTCAAAAGAAGAATT---TTAA    879
                     ||||||.|..|.|||||...||||||||||.|   ||||
BPUM_3219___g    844 TTTATGAAACAGCTTCTCGAAAAAGAAGAAGTGAATTAA    882


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