Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_05440 and BPUM_3219

See DNA alignment / Visit BSNT_05440 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:03
# Commandline: needle
#    -asequence pep-align/BSNT_05440___gtaB.1.24716.seq
#    -bsequence pep-align/BPUM_3219___gtaB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05440___gtaB-BPUM_3219___gtaB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05440___gtaB-BPUM_3219___gtaB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05440___gtaB
# 2: BPUM_3219___gtaB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 293
# Identity:     258/293 (88.1%)
# Similarity:   274/293 (93.5%)
# Gaps:           1/293 ( 0.3%)
# Score: 1341.0
# 
#
#=======================================

BSNT_05440___      1 MKKVRKAIIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQYIIEEAVEAGI     50
                     |||||||||||||||||||||||||||||||||||||||||||||||:||
BPUM_3219___g      1 MKKVRKAIIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQYIIEEAVESGI     50

BSNT_05440___     51 EDIIIVTGKSKRAIEDHFDFSPELERNLEEKGKTELLEKVKKASNLADIH    100
                     |||||||||.||||||||||:||||||||||||.||||||:|:||:||||
BPUM_3219___g     51 EDIIIVTGKGKRAIEDHFDFAPELERNLEEKGKKELLEKVRKSSNIADIH    100

BSNT_05440___    101 YIRQKEPKGLGHAVWCARNFIGDEPFAVLLGDDIVQGEKPGLRQLMDEYE    150
                     ||||||||||||||||||||||||||||||||||||.|.|||||||||||
BPUM_3219___g    101 YIRQKEPKGLGHAVWCARNFIGDEPFAVLLGDDIVQAETPGLRQLMDEYE    150

BSNT_05440___    151 KTLSSVIGVQQVPEDQTHRYGIIDPLTNEGRLYQVKNFVEKPKPGTAPSN    200
                     ||||||||||||.:..|||||||||||.|||.||||||||||..||||||
BPUM_3219___g    151 KTLSSVIGVQQVADHDTHRYGIIDPLTQEGRRYQVKNFVEKPPQGTAPSN    200

BSNT_05440___    201 LAILGRYVFTPEIFMYLDKQQIGAGGEIQLTDAIQQLNEIQRVFAYDFEG    250
                     |||||||:|||||||||::|:||||||||||||||:||:|||||||||||
BPUM_3219___g    201 LAILGRYIFTPEIFMYLEQQEIGAGGEIQLTDAIQKLNDIQRVFAYDFEG    250

BSNT_05440___    251 KRYDVGEKLGFIQTTLEFAMQDSELKDSLIPFMQDLLSKEEF-    292
                     ||||||||.|||:||||||:||.:||..|||||:.||.|||. 
BPUM_3219___g    251 KRYDVGEKQGFIETTLEFALQDEDLKKKLIPFMKQLLEKEEVN    293


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.